Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04097 ATGAACACTATTAATTTACAATTTTGCCACTGTTCCCAACTCCTCTCTTCAACCCCAAAGGTCCCGTCCCTCGCTCCTTTCTCGCAGATTGGAAAATTAACTCTGAGAAACCCAACTCCTTCTACCATTTCCTGCAAAAGTCGTCTCTTTTCTCCAATTCGAGCGTCTATGGCCTCATCCACTGTCACAGACACAGAGACGAAGCCATTCTCCGTGCTCTTCGTGTGCCTTGGTAACATCTGCAGGAGCCCAGCTGCTGAAGGAGTCTTCACAGACTTGGTCAAGAAAAGGGGTTTTGATTCCAAGTTCAAAATCGATTCTGCTGGCACGATCAATTACCACGAGGGCAATGAAGCTGACCCGAGAATGAGGGCAGCCTCCAAAAGGCGTGGGATTCAGATAACTTCTATTTCGAGGCCAATCAAGCCCTCTGATTTCATTGACTTTGATCTCATTCTTGCTATGGACAAGCAAAATAGAGAGGACATTTTGGAGGCCTTCAATAGATGGAAATTTAGACATACTATACCTGATGATGCACATAAAAAGGTGACTACAGAAGTTTACTCTTTTTGGGCTTTTGTTTTGTGTATATTTTTCTAG 603 0.4395 MNTINLQFCHCSQLLSSTPKVPSLAPFSQIGKLTLRNPTPSTISCKSRLFSPIRASMASSTVTDTETKPFSVLFVCLGNICRSPAAEGVFTDLVKKRGFDSKFKIDSAGTINYHEGNEADPRMRAASKRRGIQITSISRPIKPSDFIDFDLILAMDKQNREDILEAFNRWKFRHTIPDDAHKKVTTEVYSFWAFVLCIFF. 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04097 200 Gene3D - 54 195 - -
Seca3g04097 200 PANTHER LOW MOLECULAR WEIGHT PHOSPHOTYROSINE PROTEIN PHOSPHATASE-RELATED 42 185 - -
Seca3g04097 200 PRINTS LMW phosphotyrosine protein phosphatase signature 72 89 IPR017867 GO:0004725|GO:0006470
Seca3g04097 200 PRINTS LMW phosphotyrosine protein phosphatase signature 115 131 IPR017867 GO:0004725|GO:0006470
Seca3g04097 200 PRINTS LMW phosphotyrosine protein phosphatase signature 148 163 IPR017867 GO:0004725|GO:0006470
Seca3g04097 200 Pfam Low molecular weight phosphotyrosine protein phosphatase 72 169 IPR023485 -
Seca3g04097 200 SUPERFAMILY Phosphotyrosine protein phosphatases I 68 179 IPR036196 -
Seca3g04097 200 CDD LMWPTP 71 184 - -
Seca3g04097 200 SMART LMWPc_2 70 194 IPR023485 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04097 Seca-Chr3 78327975 78330565 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04097 10 184 Protein tyrosine phosphatase (PTP) family AT3G44620 58.730 1.66e-67 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04097 K25307 - gmx:100797254 289.271