Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04093 ATGGCGCCAGAGGACACTGTAACTGTAACTTCAAACCCTAGCCATGGAGAACGGCCAAAGGTGGTGGTTATAACGGGCCCCACCGGTTCTGGTAAGTCGAAGCTTGCCGTTGATTTGGCCTCTCACTTCCCCGTCGAAGTCATCAACGCCGATTCCATGCAAGTCTACCGTGGCCTCGATGTTCTCACCAACAAACACCCCCTCTCTGATCAAAACGGAGTGCCGCACCATCTCTTAGGTACGGTGAGTCCAGACGTGGAATTCACAGCCAAAGCTTTTCGGGATTCTGCTATTCCCATCATCGATGCCATATTGGCTCGCAACCACTTGCCCGTTATAGTTGGGGGCACAAATTACTATATCCAGGCTCTTGTGAGTCCGTTTCTTTTAGATGATTCGGCAGATGACATGAATGAAAGCTGTTTGGGCGACACACCTGGTACCACATGGTCTGATAATGGTTTCGTTGCTGAAAATGACAGTTCAAATGATAGTTATAAACTGCTTAAAGATATTGATCCAGTTGCAGCAAATAGAATCCATCCTAATAACCATAGGAAGATAAATCAATATATTAGTTTGTATGCTCGCACTGGTGTTCTTCCTAGCAAAGTTTTTCAAGGAAAGGCAGCAGAGAAGTGGGGTCAAGTTGATAGCTTAAGATATGATTGCTGTTTTATATGTGTGGACGCATCTCTCTCTGTACTGGACAGATATGTAGATCATAGAGTGGATTGCATGATGGATGCTGGACTACTCAATGAAGTCTATGACATTTATAATCTTCATGCAGATTATTCTAGAGGTTTGCGGCAGGCCATTGGTGTCCGTGAATTTGAGCTTCTTCTTAGAACTTTTGTTGTCGAAAACATCTGTAAAAGAGAGACGGAATTAACAGAGGGATCCAACATAGAGAAGCATGAGACATTGTTCAATGGTAATCTGATGGAGTGGTTGAGGTCTTCCTCTGATACTAAATCCATAATTCTTTTGGAAGAAGCAATAGAAAAAGTAAAACTTAATACCCGAAGACTTGTTCGTCGTCAGAAAAGGATGCTCAGTCGACTGCAAACACTGTTTGGTTGGAACATACACTATGTTGATTCCACGGAATCAATATCAAGCAAATCAGATGATGTATGGAGTGGCCAAGTGGTTGAATCTGCCATGAAGATAGTTAAAACTTTCCTGAGTGAGGATGGAAGCTTGTCCTCCACCTTTGGCATGCCTGCGGTGATCGGGTGCTTCGAGGATTACATGAATGGGAACAACACAGACGAGGTCGTGGGCACCGAAAACGTATTTCTAGTATCAAGAGCAAGGAACAAGGTCATGGTTTCGTGGAACAAAAGCTGGAGTATTCTGAGTGTGAAACTGCGAATAGTTAGATATCTTAAGTTTAGTATTACTATTAGTGTAGATTGGTGGTTAGAAGGGTTCAGTAGAGAGCTATGGAGAGCACGCAGAAATAACTTTGATTCTGTTAGTGGAGAAATTCCAAAGAGTGGTGGTGTGAGTATTACCCCAGGTATGAGGGGAACTGTTTGTTATGTAGCTCCTGAGTATGGATATGGTGGAGAGGTGACTGGTTCACCATTAATGTCAGAGTTTCAGAGAGCAAATCTTTTGTCATGGGCACGCCATTGTGCAAGGAATGGGAAGCTCATTGAGCTGGTTGATCAGTCCATTCAATCATTGGATAAAGAGCAGGCTCTTCTCTGCATCAAGGTCGCTTTGATTTATTTGCTTAAGATACCTGCTCGTTGTCCTTCAATGAAGGAGGTTGTGGGAATGCTTAGTGGTGAATTGGAGCCACCCCAATTGCCTGTTGAGTACTCACCTTCAACCCCTTCTCGGTTCCCTTTCAAGTCTAGGAAAAAAGTCCGGTGA 1890 0.4376 MAPEDTVTVTSNPSHGERPKVVVITGPTGSGKSKLAVDLASHFPVEVINADSMQVYRGLDVLTNKHPLSDQNGVPHHLLGTVSPDVEFTAKAFRDSAIPIIDAILARNHLPVIVGGTNYYIQALVSPFLLDDSADDMNESCLGDTPGTTWSDNGFVAENDSSNDSYKLLKDIDPVAANRIHPNNHRKINQYISLYARTGVLPSKVFQGKAAEKWGQVDSLRYDCCFICVDASLSVLDRYVDHRVDCMMDAGLLNEVYDIYNLHADYSRGLRQAIGVREFELLLRTFVVENICKRETELTEGSNIEKHETLFNGNLMEWLRSSSDTKSIILLEEAIEKVKLNTRRLVRRQKRMLSRLQTLFGWNIHYVDSTESISSKSDDVWSGQVVESAMKIVKTFLSEDGSLSSTFGMPAVIGCFEDYMNGNNTDEVVGTENVFLVSRARNKVMVSWNKSWSILSVKLRIVRYLKFSITISVDWWLEGFSRELWRARRNNFDSVSGEIPKSGGVSITPGMRGTVCYVAPEYGYGGEVTGSPLMSEFQRANLLSWARHCARNGKLIELVDQSIQSLDKEQALLCIKVALIYLLKIPARCPSMKEVVGMLSGELEPPQLPVEYSPSTPSRFPFKSRKKVR. 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04093 629 Gene3D - 19 409 IPR027417 -
Seca3g04093 629 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 19 397 IPR039657 -
Seca3g04093 629 MobiDBLite consensus disorder prediction 607 629 - -
Seca3g04093 629 FunFam LD10347p 155 210 - -
Seca3g04093 629 NCBIfam tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 21 286 IPR018022 GO:0008033
Seca3g04093 629 Gene3D - 155 209 - -
Seca3g04093 629 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 17 263 IPR027417 -
Seca3g04093 629 Hamap tRNA dimethylallyltransferase [miaA]. 21 394 IPR018022 GO:0008033
Seca3g04093 629 Pfam IPP transferase 54 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04093 Seca-Chr3 78288864 78294549 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04093 24 397 C2H2 Transcription Factor Family AT2G27760 60.053 2.69e-150 441
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04093 K00791 - gmx:100792690 654.825