Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04092 ATGGACTTTATTGGGATTAATAAATCAGCTCCTTCTTCCAGTACTTCATCATCTCAGAAGAGAAAAGCAGGGAGAAAAAAGTTCAGGGAAACTAGGCACCCGATGTATAGAGGTGTACGGCAAAGAAACGGCAAGAAATGGGTGTGTGAAATCAGGGAACCAAACAAGAAATCAAGGATTTGGGTTGGGACTTACAGTACACCTGAAATGGCAGCTAGGGCACATGATGTGGCTGTTTTAGCACTTAGAGGCACATCAGCAGAGTTCAATTTCCCTGATTCAGCTATGCTCCTTCCAGTTGCAAAGTCATGTTCAGCCACAGATATAAGAGAAGCAGCAGCAAAAGCCACTGAGGGTTTCAAACCAAGCAGCAGCAATGATGAGAGGATATTCTTGGATGAGGAGGCACTGTATAATATGCCAGGTTTGTTAGATAGTATGGCTGAGGGTTTGCTTATTACCCCGCCATCTATGAAGACAGCAATGGATTGGGACAACATTGAATGTGAAATAGACCTCACTCTATGGACAGACTAA 537 0.4358 MDFIGINKSAPSSSTSSSQKRKAGRKKFRETRHPMYRGVRQRNGKKWVCEIREPNKKSRIWVGTYSTPEMAARAHDVAVLALRGTSAEFNFPDSAMLLPVAKSCSATDIREAAAKATEGFKPSSSNDERIFLDEEALYNMPGLLDSMAEGLLITPPSMKTAMDWDNIECEIDLTLWTD. 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04092 178 CDD AP2 36 94 IPR001471 GO:0003700|GO:0006355
Seca3g04092 178 PRINTS Ethylene responsive element binding protein signature 58 74 IPR001471 GO:0003700|GO:0006355
Seca3g04092 178 PRINTS Ethylene responsive element binding protein signature 36 47 IPR001471 GO:0003700|GO:0006355
Seca3g04092 178 Pfam AP2 domain 35 84 IPR001471 GO:0003700|GO:0006355
Seca3g04092 178 MobiDBLite consensus disorder prediction 1 33 - -
Seca3g04092 178 SMART rav1_2 35 98 IPR001471 GO:0003700|GO:0006355
Seca3g04092 178 SUPERFAMILY DNA-binding domain 35 94 IPR016177 GO:0003677
Seca3g04092 178 FunFam Ethylene-responsive transcription factor 2 34 93 - -
Seca3g04092 178 Gene3D AP2/ERF domain 35 93 IPR036955 GO:0003700|GO:0006355
Seca3g04092 178 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 13 177 IPR045277 GO:0003700
Seca3g04092 178 ProSiteProfiles AP2/ERF domain profile. 35 92 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04092 Seca-Chr3 78269642 78270178 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04092 16 177 AP2-EREBP Transcription Factor Family AT4G25470 49.198 5.16e-56 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca3g04092 AP2 1.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04092 - - gmx:100793751 249.595