Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04088 ATGAGATTGGAGAAGTGCTGGTTCTGTTCTTCTACTATATACCCTGGACATGGAATCCAGTTTGTTCGTAATGATGCAAAGATTTTTCGATTTTGTAGATCTAAATGCCACAAGAACTTTAAAATGAAGAGGAATCCTCGGAAGGTGAAATGGACCAAGGCATACAGGCGGGTGCATGGAAAGGATATGACACAGGATTCAACCTTTGAGTTTGAGAGAAAGCGAAACAGGCCAGAGAGATATGACAGGAATCTTGCTGAGAATGTCCTCAAGGCCATTCCAAAGATTGATAAGATCAGAGTGAGCAGGGAGGAGAAGCACCACAAGAATAGGATGAAAGGCAAGAAGCAGAAGCTGCAGATGGAGGCAGTTAAGGAGTTGGAGCAGGGCATCAGTCTGGTCAAAGCTCCTTCTGTCCTTCTCCATCCCACAGCCACAAAGCCTAACCCTACTCGATACGTCGCCGTTCGATGCTCTCGGAGCAGCGTGCAGGAGATACAAGAAAAGTCCTCGGAGCTCCGCGCTTCGCTCTCGTTCGGTCCATTAAAGGCGGCGAAGAGGGTGGTGCTGGTGAGGCACGGGCAGAGCACGTGGAATGCCGAGGGAAGGATCCAAGGCAGTTCCAATTTCTCCGTTCTCACGAAGAAAGGGGAGTCTCAGGCCGAGACTTCCCGCCAAATGCTCATCGATGACCACTTCGATGCCTGCTTTGCAAGGTTTCTTTCTTCCTCCATTGTTGCTTATTACTGCTTTCCTTTGGCACGATCCAAGAGAACCGCTGAAATCATATGGGGACCTCGCCAAGAATCCATCATTCCGGAGTTTGAGTTGCGGGAAATCGATTTGTACTCCTTTCAGGGTTTGTTGAAGCAAGAGGGAAAAGCCAGATTTGGTTCTGCTTATCGTGAATGGCAGGTGGATGCCGCGAATTTCATCATTGATGGTCATTATCCGGTGAGAGAGCTGTGGGAACGTGCTAGAAACTGCTGGACTAAAATTTTGGCTCACGATAGCAGGTCTGTTCTTGTGGTTGCTCACAATGCTGTTAATCAGGCTCTTGTTGCCACAGCAATTGGTCTTGGGGCTGAGTATTTCAGAACTTTACTTCAGAGCAATTGTGGTGTAAGTGTGCTGGATTTCACCCCAAGACCCGATGGTGGGTCTCCACATATTTGCCTTAACCGCTTAAATCAGACCCCTGGTTCGCCTATTGCTGGTGGAAAATCTGGAGGTAGAGAGACAAGTAAGCGGATCATACTTGTTTGTAATGGAACTACACAAGGAAATACAGAGGATGGTTTTCCTTTTGCTGGTGATCAACCGATGAACATGCTTGGTGTTATACAGTCCCAGAAATCTGCAGAGCTACTTCTTGATTTGAATGTGAATTCCATAATTAGCAGTCCTAACAAAGCCTGTGTTGAGACAGCCATGGCCATCTCTAAGGTACAAGAAGCTGCAGATTGCTTGGGTGCTGACTGTGTGCCACGCTATGTTGAGATGAAGCAGATGGGGAACCTTGATATTGAAACCATCTTTAGACAATCCAAAATGGCAAGTAACTTACTGTCATATCAGGATATATCCAATCTTGTACCATTTCAGCCTGGGTGGTTAAATAGAGTAGAGGATGGATTGAGAACAACATTATGGGATCAATCTGGAAAAGCCTGGCAATCCCTGTTGGATGAAATATCTGATGATTCTAGGACAGAAGTTGTAGTTGCAGTTGCTCATCCTGCGCTCCACATAGCACTAATGGCACACTGCCTTAATTTGACAAAAGAATGGTTGGGATCATTTCATCTTGATGCAGGGAGCATTAGTGTCCTTGACTTCCCGGATGGAACTAAGGGAAGAGGCGTCATCAGGTGCATAAATTATACAGCACACTTGGGGAGATGGTCCATCCCTATCACAAGATCCACAGAGGATGGTGAAGAGTTTTAA 1950 0.4636 MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRVHGKDMTQDSTFEFERKRNRPERYDRNLAENVLKAIPKIDKIRVSREEKHHKNRMKGKKQKLQMEAVKELEQGISLVKAPSVLLHPTATKPNPTRYVAVRCSRSSVQEIQEKSSELRASLSFGPLKAAKRVVLVRHGQSTWNAEGRIQGSSNFSVLTKKGESQAETSRQMLIDDHFDACFARFLSSSIVAYYCFPLARSKRTAEIIWGPRQESIIPEFELREIDLYSFQGLLKQEGKARFGSAYREWQVDAANFIIDGHYPVRELWERARNCWTKILAHDSRSVLVVAHNAVNQALVATAIGLGAEYFRTLLQSNCGVSVLDFTPRPDGGSPHICLNRLNQTPGSPIAGGKSGGRETSKRIILVCNGTTQGNTEDGFPFAGDQPMNMLGVIQSQKSAELLLDLNVNSIISSPNKACVETAMAISKVQEAADCLGADCVPRYVEMKQMGNLDIETIFRQSKMASNLLSYQDISNLVPFQPGWLNRVEDGLRTTLWDQSGKAWQSLLDEISDDSRTEVVVAVAHPALHIALMAHCLNLTKEWLGSFHLDAGSISVLDFPDGTKGRGVIRCINYTAHLGRWSIPITRSTEDGEEF. 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04088 649 CDD Ribosomal_L24e_L24 1 54 IPR000988 -
Seca3g04088 649 ProSitePatterns Phosphoglycerate mutase family phosphohistidine signature. 190 199 IPR001345 GO:0003824
Seca3g04088 649 SMART 4TRASH 6 44 IPR011017 -
Seca3g04088 649 Gene3D - 410 636 IPR029033 -
Seca3g04088 649 Pfam Ribosomal protein L24e 1 65 IPR000988 -
Seca3g04088 649 FunFam Phosphoglycerate mutase 186 402 - -
Seca3g04088 649 SMART PGAM_5 187 353 IPR013078 -
Seca3g04088 649 SMART PGAM_5 417 586 IPR013078 -
Seca3g04088 649 FunFam probable ribosome biogenesis protein RLP24 1 67 - -
Seca3g04088 649 ProSitePatterns Ribosomal protein L24e signature. 8 25 IPR023442 -
Seca3g04088 649 Pfam Histidine phosphatase superfamily (branch 1) 418 484 IPR013078 -
Seca3g04088 649 Pfam Histidine phosphatase superfamily (branch 1) 188 382 IPR013078 -
Seca3g04088 649 FunFam Putative 2-carboxy-D-arabinitol-1-phosphatase 409 636 - -
Seca3g04088 649 CDD HP_PGM_like 187 386 IPR013078 -
Seca3g04088 649 Gene3D - 186 385 IPR029033 -
Seca3g04088 649 PANTHER BROAD-SPECIFICITY PHOSPHATASE YOR283W-RELATED 413 617 - -
Seca3g04088 649 SUPERFAMILY Phosphoglycerate mutase-like 186 393 IPR029033 -
Seca3g04088 649 CDD HP_PGM_like 417 624 IPR013078 -
Seca3g04088 649 SUPERFAMILY Phosphoglycerate mutase-like 415 637 IPR029033 -
Seca3g04088 649 Gene3D Ribosomal protein L24e 1 68 IPR038630 -
Seca3g04088 649 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 4 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04088 Seca-Chr3 78042681 78055241 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04088 1 137 Cytoplasmic Ribosomal Protein Gene Family AT2G44860 77.372 1.83e-72 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04088 K22200 - gmx:100794084 841.647