Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04080 ATGTCAACCTCCAAGAACCACCGAAACGGCCAGGTAGAGACTCACCGGCGTGGGAGTTTACCAGAGAAATCATCATCTTTCTACGGCCACACCTCCACGGCGGCAGCCATGTCCGGCTCCCAAATCCGGCGACCGAAGACGGTGCCAGACCTTGTGTCCGACAGGAAGCGTGCGGCGATGACGACGGTGGCGGAGGTTGCACCGAGACAGCCACCGAAGTTGCTACTGAAGGTGACGATGATGGGAAGCCTCGGCCCAGTGCAGGTGGTGATGACGCCGGAATCGACAGTCGGCGATTTGGTGGCGGCGGCGGTGCGCCAATACGTGAAAGAAGGTCGCCGCCCAATCTTGCCGTCCAACGACCCCTCGCACTTCGACCTTCATTATTCTCAGTTTAGCTTAGAAAGTTTGGATAGGGAGGAGAAGTTGAGAGAACTTGGATCTAGAAACTTTTTTCTGTGCCCGAGGAAGTGTAAGGGTGGTGTTGGCGTGGACGACAGTGCAACGACGTCGTTTGGTGTTGAGGTTAAGGTTGGGCAATCTGTTAAAGTAGACCCAGCGGATGACTTGAATGGATACATACACATTTCTCAGGTTGCACTTGGGGAGGCAAAGAAAGACAAAGCAAATGAACCTGTTGTTTTGTACTTGAAAGTTGATGACCAGAAGTTTGTTTTGGGAACTCTTACTAGGGATGATATCCCTCAGCTATCTATGGATTTAGTTCTGGACAAGGAGTCTGAGCTTTCCCACAATTCAAAAAATGCTAGTGTCTATTTTTGTATGAATGCTGATAGCGATAGTGATGAGGAGAATGAGAGTGATGAAGATGATGAAGAGACCCCTGTTAAGAAGGTGGATCAGGGCAAGAAGAGACCCAATGAGTCTGCATCAAAAACTCCAGTTCCTACCAAGAAAGCTAAAAATGCTACTCCTGAAAAGACTGATGGTAAGAAAGGTGGGCATACAGCAACTCCTCACCCTATGAAGAAAGGTGGAAAAACTCCCAACAGTGCTGCAAAGAACCAGACTCCCAATTCTGGTTTATCTTGCAAAAGTTGTAACAAGTCTTTCAACAACGAAAGTGGTCTGCAACAACATAAAAAGGCCAAGCATGGTGGTCAGTGA 1128 0.4876 MSTSKNHRNGQVETHRRGSLPEKSSSFYGHTSTAAAMSGSQIRRPKTVPDLVSDRKRAAMTTVAEVAPRQPPKLLLKVTMMGSLGPVQVVMTPESTVGDLVAAAVRQYVKEGRRPILPSNDPSHFDLHYSQFSLESLDREEKLRELGSRNFFLCPRKCKGGVGVDDSATTSFGVEVKVGQSVKVDPADDLNGYIHISQVALGEAKKDKANEPVVLYLKVDDQKFVLGTLTRDDIPQLSMDLVLDKESELSHNSKNASVYFCMNADSDSDEENESDEDDEETPVKKVDQGKKRPNESASKTPVPTKKAKNATPEKTDGKKGGHTATPHPMKKGGKTPNSAAKNQTPNSGLSCKSCNKSFNNESGLQQHKKAKHGGQ. 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04080 375 Gene3D Nucleoplasmin core domain 165 269 - -
Seca3g04080 375 MobiDBLite consensus disorder prediction 1 49 - -
Seca3g04080 375 Pfam Nucleoplasmin-like domain 172 256 IPR041232 -
Seca3g04080 375 ProSitePatterns Zinc finger C2H2 type domain signature. 351 372 IPR013087 -
Seca3g04080 375 MobiDBLite consensus disorder prediction 279 294 - -
Seca3g04080 375 ProSiteProfiles Zinc finger C2H2 type domain profile. 349 375 IPR013087 -
Seca3g04080 375 MobiDBLite consensus disorder prediction 265 375 - -
Seca3g04080 375 MobiDBLite consensus disorder prediction 309 323 - -
Seca3g04080 375 PANTHER BNAC05G50380D PROTEIN 17 162 IPR040358 -
Seca3g04080 375 MobiDBLite consensus disorder prediction 336 364 - -
Seca3g04080 375 FunFam Histone deacetylase HDT1 169 267 - -
Seca3g04080 375 SMART c2h2final6 349 372 IPR013087 -
Seca3g04080 375 MobiDBLite consensus disorder prediction 24 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04080 Seca-Chr3 77784952 77796778 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04080 172 367 C2H2 Transcription Factor Family AT3G44750 36.546 1.53e-29 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca3g04080 NPL 2.1e-10 CL0055
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04080 - - gmx:100792165 270.011