Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04064 ATGACGGAGGCAGGGCCGGTGCTGTCCATGTGTTTGGGGTTTGCAAAGCAGTCGTTCCCAACAAAGTCAGGATCATGTGGCACTGTTGTAAGAAATGCTGAGCTTAAGGTTGTTGACCCTGAAACTGGTCTTTCTCTTGGCTACAATCAACCTGGTGAAATCTGCATCCGAGGGCAACAGATCATGAAAGTTTTGAACTCCAAGGTCATTGAATTTGCTGTCAAGTTGGGACTCGCTCTTAATTGCAACTTGGCTTTCAACTCCAAGTTTGATAGGAAGCAGTATTTTTACCCTGATCTTCCAAAAGGGTATCAAATTTCTCAATTTGATGTGCCAATTGCTATTGGTGGTTTTCTTGATGTGGATATTCCCGTGGAGTTTGGTGGAGGCCACAAGAGGTTTGGAATTACAAGGGTTCACATGGAAGAAGATGCAGGGAAGCTCCTTCATACAGAAACAGGAAATTACTCTCAGGTGCCCCCAGCAGAACTTGAAGGCCTTCTCGTAAGCCATCCCTCTGTTGCAGACGCAGCTGTTGTCCCACAAAAGGATGTTGTTGCTGGTGAAGTTCTCGTTGCCTTCGTGGTGAGGTCAAATGGCTTTGATCTAACAGAAGAAGCTGTAAAGGAGTTTATATCTAAACAGGTAGTGTTTTATAAAATGAATTTCTTGAAGTATTTTTGCACTATAAGCTGGAAATTCGAATTGAAATCTTTACCTGTTCTATTTGCTAGCAACTAA 741 0.4305 MTEAGPVLSMCLGFAKQSFPTKSGSCGTVVRNAELKVVDPETGLSLGYNQPGEICIRGQQIMKVLNSKVIEFAVKLGLALNCNLAFNSKFDRKQYFYPDLPKGYQISQFDVPIAIGGFLDVDIPVEFGGGHKRFGITRVHMEEDAGKLLHTETGNYSQVPPAELEGLLVSHPSVADAAVVPQKDVVAGEVLVAFVVRSNGFDLTEEAVKEFISKQVVFYKMNFLKYFCTISWKFELKSLPVLFASN. 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04064 246 Gene3D - 154 233 IPR045851 -
Seca3g04064 246 Pfam GatB/GatE catalytic domain 63 153 IPR006075 GO:0016874
Seca3g04064 246 Pfam AMP-binding enzyme C-terminal domain 163 217 IPR025110 -
Seca3g04064 246 SUPERFAMILY Glutamine synthetase/guanido kinase 53 158 IPR014746 GO:0003824
Seca3g04064 246 SUPERFAMILY Acetyl-CoA synthetase-like 159 220 - -
Seca3g04064 246 SUPERFAMILY Acetyl-CoA synthetase-like 1 63 - -
Seca3g04064 246 Gene3D - 1 65 IPR042099 -
Seca3g04064 246 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 158 221 - -
Seca3g04064 246 Pfam AMP-binding enzyme 1 63 IPR000873 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04064 Seca-Chr3 76960697 76962166 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04064 1 180 Monolignol Biosynthesis Gene Families AT3G21240 43.407 1.24e-31 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04064 K02434 K01904 gmx:547930 214.542