Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04062 ATGGAGGACTTGAACCAAAACGTTACTTTCACTGACTCTCCAAGCCCCACTCTGAACAAACCACAAACCAACTATGAGACACCCGTGCAACCCAACTATGGCGAAAACAACGCCGCACTGGAAGGTGTCGGAGTTGAGAATGTTGTCTCTGGCTCAGTTATCTCCGGAGCACAGTCCCAGGGATCGGAACCAGCGGTGAAGAGGGGAAGGGGAAGACCCAGGAAGTACGATGTTAATGGGAACAGGCTGTCTTCTTCGGCAACGCCACCACCGCCGCCTGGATTTGACATTCAGCCTTACGCTGAAAGTGTTGTCAAGAGAGGCAGGGGACGCCCTCGTGGCACTGGAAAACTGCAGATTCTGGCCTCCATGGGTGGGTATGTTGCAGAAACAGCTGGGGGAAGCTTCATACCTCATGTGCTGACTGTGAACACTGGGGAGGATGTGGTCAACAAGATAATATCATTTTTTCAGAAAGGCCCTCGCTCAGTTTGCATACTCTCTGCTACTGGTCCTGTATCAAGTGTCACCATTCGCCAACCTGGTCCTATTGGTGGTTTTTTGAGATATGAGGGCATCTTCCAGATTTTATCTCTATCTGGCTCATGTACCTACACTGGTGCTGGTGGTGCACTTCGAAAAAGTGGCATGTTGAGTGTTTCACTGGCTAAACCTGATGGGAGGGTTTTTGGAGGTGGCATTGAGAGCTCATTGATAGCAGCTGGCCCTATTCAACTTGTTTTGGGCACTTTCAAGCAAAACATCACCAACAAAACCAAGAAAAGGAACTCATCTTCTGCTGCTGCCAACATGGCTGATAATCCAGATCACCTGAAGGTTCCTAAGTTGATGGAAGGAGAGCAGAGTTACCCTTCACCAATATCAGCAATTAGGCCAGCAGCAACAACAACTAATGGAGTAGCAGATAAGGTCATTCCTGCAACAACTGAAGTAGTACCAGATTATGTGAATCCTGATGATAACAATGTGCATTCTGATTCTGTTAGTGGTGTTGACTTGGAGTACCAGATCCTTCAGCCTAGCCCAGACCAAAGAACACCTGCAGATGTTGATGTCATTGCTCCTTAG 1089 0.4821 MEDLNQNVTFTDSPSPTLNKPQTNYETPVQPNYGENNAALEGVGVENVVSGSVISGAQSQGSEPAVKRGRGRPRKYDVNGNRLSSSATPPPPPGFDIQPYAESVVKRGRGRPRGTGKLQILASMGGYVAETAGGSFIPHVLTVNTGEDVVNKIISFFQKGPRSVCILSATGPVSSVTIRQPGPIGGFLRYEGIFQILSLSGSCTYTGAGGALRKSGMLSVSLAKPDGRVFGGGIESSLIAAGPIQLVLGTFKQNITNKTKKRNSSSAAANMADNPDHLKVPKLMEGEQSYPSPISAIRPAATTTNGVADKVIPATTEVVPDYVNPDDNNVHSDSVSGVDLEYQILQPSPDQRTPADVDVIAP. 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04062 362 Pfam AT hook motif 106 116 IPR017956 GO:0003677
Seca3g04062 362 Pfam AT hook motif 67 76 IPR017956 GO:0003677
Seca3g04062 362 CDD DUF296 138 251 IPR005175 -
Seca3g04062 362 ProSiteProfiles PPC domain profile profile. 133 272 IPR005175 -
Seca3g04062 362 SMART AT_hook_2 67 79 IPR017956 GO:0003677
Seca3g04062 362 SMART AT_hook_2 106 118 IPR017956 GO:0003677
Seca3g04062 362 MobiDBLite consensus disorder prediction 1 36 - -
Seca3g04062 362 Gene3D - 138 270 - -
Seca3g04062 362 MobiDBLite consensus disorder prediction 54 97 - -
Seca3g04062 362 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 35 287 IPR039605 GO:0003680
Seca3g04062 362 MobiDBLite consensus disorder prediction 1 34 - -
Seca3g04062 362 SUPERFAMILY AF0104/ALDC/Ptd012-like 135 260 - -
Seca3g04062 362 Pfam Plants and Prokaryotes Conserved (PCC) domain 138 252 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04062 Seca-Chr3 76693673 76697711 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04062 66 261 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 45.933 3.47e-50 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04062 - - aip:107632385 294.278