Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04061 ATGGAACCCCCGGTTGCGAGATCGAGGGGTCGCCCGAGGAAACGAAGAAAAGAGGACGAAAATGAAGGGAAATCGGTTCCTGAAGCAAAAAGGACGAGATCGATAGCATTGGTTGGGCGATATGTGCTGAAAGAGTTCCCCAGAAATGGAGTTTTTCTCGGTAAAGTTGTATATTACGAGTGTGGGTTGTATAGAGTCAATTACGAGGATGGTGATTCTGAGGATTTGGATAGCGGTGAGGTTCGTGCGATACTTCTCAGTGATGGTGATTTCAATGGTGATTTAGCAAAGAGGAAAGGCAAATTGGAGGAATTAGTGTTACGGAATAGTTTAAAGGCTGCAGAGGTGTCGAAAAAGGACCCGAACAAAGAGGAATCAGCTGTTGAAGTGCCTGTTTCGAATGAATTGAACGGTGGATTATCGGTTGGAAACAATGAGGGAGAAGATGATGAAGCGGATGCTGATTCGTCGAGTGAATCAGGCATGGGTTTAAGGGAAAAGGATTCTGGGTCTGATGCTGAGACGCCGTTACTGCCACCGCCGTTGCAGTTGCCACCGTCGTCAGGGACTATTGGCGTGCCTGATAAATGTGTTTCACACCTGTTTGCTGTTTATGGATTCTTACGATCATTCAGCACTCGCCTGTTTCTACTACCCTTTTCTTTGGATGAGTTTGTTGGTTCTCTTAATTGCCAAGTCGCGAACACCTTGTTTGACGCCATTCATGTTTCCCTACTGAAGATGTTGAGGCGCCATCTTGAAACCCTCTCATCTGAGGGCTCAGAGCTTGCATCGCAATGCCTTAGGTGCAACGATTGGAGCTTGCTTGATACATTGACTTGGTCTGTTTTTGTGATTCAGTATTTAGTAGTTAATAGATACACAAAAGGACCTGAATGGATAGGATTTTATGATGAGGTTTTTAATGGCGAGTATTATTCATTGCCAGTAAGTAGGAAGTTAATAATATTGCAAATTCTTTGTGATGATGTTTTGGATTCTGAGGAGCTAAAAGCTGAAATGAACATGCGTAAAGAATCAGAGGTTGGGATGGATTATGATGATGCAGAAGATATTCTTCCTGCAGAAACTGGGCCAAGAAAAGTCAATGCAAGATATGCCAAGACTTCATTTTGTGAGGATAAAGAAGCTATGAAATTTGTTTCAGCATCAAATGCTGTGAACCAGCCTGGTAACTCTATTTCATATGTTAAAAATACAGAGAGCACTGAGGGTGGTGATGTTGATAGAAATGGAGATGATTGTTGCCTCTGTGGTATGGATGGAAACCTGCTTTGCTGTGATGGTTGTCCCTCTGCTTATCATACTAGGTGTATTGGTGTGATGAAAGTGCAAATACCAGGAGGATCATGGTATTGTCCCGAGTGCAAAATTAATATGACTGGGCCGACAATTACAAGGGGAACATCACTTAGAGGGGCTGAAATATTTGGAAAGGATTTGTATGGGCAACTCTTCATGGGTACTTGCGACCACTTACTTGTGCTCAATGTTGACAAAGATGAATTTCATCTTAAATATTACAATCAGAATGACATTCCTAAAGTGATCCAAGTACTCTATGAATCCATGCAGCATAGACCAATATACTATGGTATTTGCATGGCAGTGCTACGATATTGGAGTATTCCAGAAAATTTCTTACCTCTTTCTGTTTCAGCTGGAATAAATGTAAACCCAACAAATATTAAGGAAGAGGCAAAATTCTCTACTTCATTACTTCCTCCTCTAAGTGAAGACAACCAAAAACCTGTTAGTTTGGTGAAGGGAGAATACCCTCCAACTGACAGTGATAATATGGTGCCGCAACTTGATGCTTCATCAGTTATCACTCAAAGTCCTGCTCCTGAAAGCAGTGACAATGCTAGTAGTAAAGAGTGCCCTACTGTGGATATGAAGCTTCCTGAGGAAACCAGGACTGAGTCAGTCATTTCAGCTGGTTCTGGTTCTGTTTCTGTGAGTCATCAGTCTGACATACACTATCACAATTCTGTTAATATGTCAACTGCAGCTGATCCTGCTAAATGCTCTTTGGTAAACAGCTGGTTTAGTAATAATGGTCATGCAAATGATATGGGGTTGCCTATGAATTTTTCTTTGCAAACCAAAGAAAACACCCAAGGCGGTTTTGGAAAGTGTGAACTCAATGTAACTAGCGATTTTGGGTACATGGGTTCCTCCTATAAACCTCTGTCTTACATAAATTACTATATGCATGGTGATTTTGCTGCATCAGCAGCTGCTAAACTTGCCATTCTTTCTTCAGAGGAATCTAGGTCAGAGGGTCATGTGTCAGACAATCAGAGGAAAACTGCATCTGCAATCACTTATCTTCAAGCAAAAGCATTCTCACTAACAGCTTCACGCTTCTTTTGGCCCAGTTCTGAGAAGAAGCTTGTAGAGGTTCCAAGAGAGAGGTGTGGCTGGTGCTTTTCTTGTAAAGCCCCTGTTTCTAGCAAAAGAGGATGCATGTTAAATCATGCTGTTATAAGTGCCACAAAAAGTGCTACAAAAATCCTTGCTGGTTTTTCTCCCTTAAGGAGTGGAGAGGGAATTCTTCCTAGCATTGCAACTTACATTATATACATGGAGGAATGTTTACACGGTTTAATAGTTGGGCCCTTCCTAAATGCAAGCTATAGAAAGCAATGGCGTAAGCAAGTGGAACAAGCTACAACATTTAGTGCTATCAAACCGCTTTTACTTAAACTTGAGGAGAACATTCGAATCATTGCCTTTTCTGGGGACTGGGTTAAGCTGATGGATGATTGGTCAGTTGAATTTCCCATGATACAAAGTGCTGCATCTACTCTTGGAACAACTCAGAAACGTCCACCAAGTGGGAGGCGTTACAAGAAGAGGTCATCTGTTGATGAAGCTACAACTGATGGTTGCCATGAAAACTTTGTGTGGTGGCGTGGTGGCAGATTTGCTAAATTTATATTCCAGAAAGCGACATTGCCAAAATCCATGGTCAGAAAAGCAGCTCGCCAAGGTGGTTTGAAAAAAATTGCTGGTATTTTCTATGCTGATGGCTCTGAAATTCCTAAAAGAAGCAGGCAACTTGTTTGGAGATTTGCAGTCCAATTGAGCAGGAATGCATCACAGCTAGCACTTCAGGTCAGATATCTAGATTTTTACCTCAGATGGAGTGATCTAATTCGTCCCGAGCAGAACATCCAGGATGGAAAAGGTCAAGAGACTGAAGCTTCTGTTTTCAGAAATGCAAATATTTGTGACACAAGATTTGTAGAGGGAAAAAGTTGTTATGGAATAGCTTTTGGGAGCCAAAAGCATCTTCCTTCTCGGGTGATGAAAAATGTTGTTGAAATAGAGCAAGGTGCAGAAGGAAAGGAGAAGTATTGGTTTTCTGAAACACGCATTCCTTTATACTTGATAAAAGAATATGAAGAAGCTAATGAAAAAGTTTCATGTGATGAAGAGCACTATAGTGATGCATTTCCGTTGCACAGAAGGCGATTGAAAGTTACCTGCAAGAACATATTTTATTACCTTACCTGCAAGAGAGACAACTTGGACATATTCTCATGTTCTGGATGTCAGATGGATGTTTCAATTCGGTATGCTCACAGGTGTGGTGCATGTCAAGGTTATTGTCATGAGGGCTGTTCCATAAGTTCAGTCTCTACAAACAAGGAATTTGGGTACATGACCACATGCAAACAGTGTTACCATGCCATGTTACTTGCTCCAAAAGGGACTAATAATGAATCTCCAACCAGTCCCTTACTCTTACAAGGTCGAGAAAATGGCTCTGGGACTGTTTCTAATGGACCGAGGACAAAGGCTAGTCATCCTGACATGAAACAAGCTACTTCAGTGACAGTTTTGAAGGGACCAAGGCCTAAACGTCATGATCAAACACCGAAAACTACCAGGATAAAGAATAGCCATCCTGGAACAAAACAAGTTGCTTCTGATTCTGCAAAAAGCCGTCGCAAGAATTGTTCTTGGGGTCTTATATGGAAAAAGAAAGGTAATGAAGATATTGACATTAATTTTAGGACCAAAAACATACTTTTAAAGGGTGGATCTGGGATGCCTCAATCGTGTTTGGAACCACCTGTTTGTCACTTGTGCCGCAAGCCATATAGGTCTGATCTAATGTATATTCGCTGTGAGACATGCCAAAATTGGTATCATGCTGAAGCTGTTGAACTTGAAGAATCCAAAATTCTGGATTTATTGGGCTTCAAATGTTGCAAGTGTCGTAGGATAAAATCACCTGTATGTCCTTACTTTGAGCCTAAGGAGGGTAAGAAATCACACACAAGGGCTTCAAAGAAAGAGCATTCAGGAGCAGATTCTGATTCTGGAACATTTACTGATATGAAAGAGCGTGAACCTGCTACTCCCGTCTTTCCTGTGGAGGACGATCCTTTACTTTTCTCTCTTTCAAGTGTTGAGCTGATTACAGAACCTAAGTTAGATGTGGATGCTGAGTGGAACACTGTCTCTGTGCCTGGGCTTCAGAAACTACCAGTGAGAAGGCATGTTAAGCGTGAGGGGGATGGTGATGGTTCTGTTGGAGGTATACCTTTAGATGCTGAATTCTCAACACACAATGAAGCAGGTAATCTGTCCAAATCTGCAGATTCATTATCACCTTTAGAATATGACCCTGCTATGCACTTTGACAGCAATTTACTGAACAACACTGAAAGTCTAAATTATGAATGCATGGAGTTTGAACCCCATACCTACTTCTCTTTAACGGAACTGCTGCACCCAGATGATGGTAGCCAGTTTGAGGGAGTTGATGTGTCTGGGGACTTGTCAGGATATTTGGGAAGTTCTGGTACCCTTGTTCCTGAAAAATGTGGAGGTGTTAGTTCAATCGATAAATCAGAACCTGCAATTTCCTTACAAGATAGTGATTATAGTTGTCAGAAATGTTCACAAATGGATCCAGTCCCTGATCTCTGTTGTAAGTTTTGTGGGATTTTGTTTCACAGCCAATGTTCACCTTGGGTGGAATCACCATCTGGGCTTGGAAATTGGAGGTGTGGGAATTGCCGGGAATGGCAATAG 5073 0.4169 MEPPVARSRGRPRKRRKEDENEGKSVPEAKRTRSIALVGRYVLKEFPRNGVFLGKVVYYECGLYRVNYEDGDSEDLDSGEVRAILLSDGDFNGDLAKRKGKLEELVLRNSLKAAEVSKKDPNKEESAVEVPVSNELNGGLSVGNNEGEDDEADADSSSESGMGLREKDSGSDAETPLLPPPLQLPPSSGTIGVPDKCVSHLFAVYGFLRSFSTRLFLLPFSLDEFVGSLNCQVANTLFDAIHVSLLKMLRRHLETLSSEGSELASQCLRCNDWSLLDTLTWSVFVIQYLVVNRYTKGPEWIGFYDEVFNGEYYSLPVSRKLIILQILCDDVLDSEELKAEMNMRKESEVGMDYDDAEDILPAETGPRKVNARYAKTSFCEDKEAMKFVSASNAVNQPGNSISYVKNTESTEGGDVDRNGDDCCLCGMDGNLLCCDGCPSAYHTRCIGVMKVQIPGGSWYCPECKINMTGPTITRGTSLRGAEIFGKDLYGQLFMGTCDHLLVLNVDKDEFHLKYYNQNDIPKVIQVLYESMQHRPIYYGICMAVLRYWSIPENFLPLSVSAGINVNPTNIKEEAKFSTSLLPPLSEDNQKPVSLVKGEYPPTDSDNMVPQLDASSVITQSPAPESSDNASSKECPTVDMKLPEETRTESVISAGSGSVSVSHQSDIHYHNSVNMSTAADPAKCSLVNSWFSNNGHANDMGLPMNFSLQTKENTQGGFGKCELNVTSDFGYMGSSYKPLSYINYYMHGDFAASAAAKLAILSSEESRSEGHVSDNQRKTASAITYLQAKAFSLTASRFFWPSSEKKLVEVPRERCGWCFSCKAPVSSKRGCMLNHAVISATKSATKILAGFSPLRSGEGILPSIATYIIYMEECLHGLIVGPFLNASYRKQWRKQVEQATTFSAIKPLLLKLEENIRIIAFSGDWVKLMDDWSVEFPMIQSAASTLGTTQKRPPSGRRYKKRSSVDEATTDGCHENFVWWRGGRFAKFIFQKATLPKSMVRKAARQGGLKKIAGIFYADGSEIPKRSRQLVWRFAVQLSRNASQLALQVRYLDFYLRWSDLIRPEQNIQDGKGQETEASVFRNANICDTRFVEGKSCYGIAFGSQKHLPSRVMKNVVEIEQGAEGKEKYWFSETRIPLYLIKEYEEANEKVSCDEEHYSDAFPLHRRRLKVTCKNIFYYLTCKRDNLDIFSCSGCQMDVSIRYAHRCGACQGYCHEGCSISSVSTNKEFGYMTTCKQCYHAMLLAPKGTNNESPTSPLLLQGRENGSGTVSNGPRTKASHPDMKQATSVTVLKGPRPKRHDQTPKTTRIKNSHPGTKQVASDSAKSRRKNCSWGLIWKKKGNEDIDINFRTKNILLKGGSGMPQSCLEPPVCHLCRKPYRSDLMYIRCETCQNWYHAEAVELEESKILDLLGFKCCKCRRIKSPVCPYFEPKEGKKSHTRASKKEHSGADSDSGTFTDMKEREPATPVFPVEDDPLLFSLSSVELITEPKLDVDAEWNTVSVPGLQKLPVRRHVKREGDGDGSVGGIPLDAEFSTHNEAGNLSKSADSLSPLEYDPAMHFDSNLLNNTESLNYECMEFEPHTYFSLTELLHPDDGSQFEGVDVSGDLSGYLGSSGTLVPEKCGGVSSIDKSEPAISLQDSDYSCQKCSQMDPVPDLCCKFCGILFHSQCSPWVESPSGLGNWRCGNCREWQ. 1691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04061 1690 CDD Tudor_AtPTM-like 38 86 IPR047365 -
Seca3g04061 1690 MobiDBLite consensus disorder prediction 13 29 - -
Seca3g04061 1690 ProSiteProfiles Zinc finger PHD-type profile. 419 466 IPR019787 -
Seca3g04061 1690 MobiDBLite consensus disorder prediction 1430 1459 - -
Seca3g04061 1690 MobiDBLite consensus disorder prediction 1 29 - -
Seca3g04061 1690 MobiDBLite consensus disorder prediction 607 633 - -
Seca3g04061 1690 SUPERFAMILY FYVE/PHD zinc finger 1365 1424 IPR011011 -
Seca3g04061 1690 CDD PHD2_CHD_II 422 463 - -
Seca3g04061 1690 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1359 1434 IPR013083 -
Seca3g04061 1690 MobiDBLite consensus disorder prediction 1430 1458 - -
Seca3g04061 1690 SMART testlast3 195 255 IPR018501 -
Seca3g04061 1690 MobiDBLite consensus disorder prediction 115 187 - -
Seca3g04061 1690 PANTHER PHD FINGER FAMILY PROTEIN 33 1654 - -
Seca3g04061 1690 MobiDBLite consensus disorder prediction 1249 1285 - -
Seca3g04061 1690 ProSiteProfiles DDT domain profile. 195 255 IPR018501 -
Seca3g04061 1690 Pfam DDT domain 196 252 IPR018501 -
Seca3g04061 1690 MobiDBLite consensus disorder prediction 1307 1325 - -
Seca3g04061 1690 MobiDBLite consensus disorder prediction 1249 1325 - -
Seca3g04061 1690 SUPERFAMILY FYVE/PHD zinc finger 1637 1688 IPR011011 -
Seca3g04061 1690 SUPERFAMILY FYVE/PHD zinc finger 392 465 IPR011011 -
Seca3g04061 1690 ProSitePatterns Zinc finger PHD-type signature. 422 463 IPR019786 -
Seca3g04061 1690 MobiDBLite consensus disorder prediction 581 648 - -
Seca3g04061 1690 MobiDBLite consensus disorder prediction 945 964 - -
Seca3g04061 1690 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 400 471 IPR013083 -
Seca3g04061 1690 Pfam PHD-finger 422 464 IPR019787 -
Seca3g04061 1690 SMART PHD_3 1370 1418 IPR001965 -
Seca3g04061 1690 SMART PHD_3 421 464 IPR001965 -
Seca3g04061 1690 SMART PHD_3 1642 1687 IPR001965 -
Seca3g04061 1690 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 309 342 IPR028942 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04061 Seca-Chr3 76535377 76547873 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04061 285 551 EF-hand Containing Proteins AT5G22760 51.087 1.86e-73 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Seca3g04061 DDT 5.3e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04061 - - lang:109351702 2338.53