Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04032 ATGGAGAGGAATGGGGTGAGCAATGATTACAGTTCAGAGGATGAAGGCACTGAGGGTTATAGGCGTGGAGGATACCATGCAGTTCGAGTTGGTGACATTTTCAAGAATGGCTGCTATGTCGTGCAGTCCAAGCTCGGTTGGGGTCTTTTTCCACTGTCTGGCTCGCTTGGGACACTCTCCATTCGGTGCCTCCTCTCTCCTAAGAATGCTTTTGAACTTCATCGTTCCCGTTATGTAGCCCTTAAAATTCAGAAGAGTGCGCAGCACTACACTGAAGCTGCGTTGGATGAAATAAAGATTCTCAAACAAGTTGCAGAGGGAGACCATGATGACAAGAAATGTGTTGTGAAGCTATTGGATCACTTTAAGCATTCGGGGCCTAATGGGCTGCATGTGTGTCTGGTTTTTGAATTTCTTGGTGACAATCTTCTCACCCTTGTCAAATACAGTGGCTATCGTGGGGTTCCTCTCCCCATGGTTAAAGAAATCTGTTTTCATATTTTGGTGGGCTTAGATTACTTGCACCGTGAGCTTTCAATCATACACACTGATCTGAAGCCAGAGAATGTGTTGCTTCTGTCACTGATAGATCCATACAAGGATCCTAGGAAATCAGGTGCTCCACTTATCCTTCCAACTACTGAGGATAAAGCTGTGTCCAATAATGAGACTACCAAAGACAATAAAATTTTGAATGGGGATCTGATGAAGAACCAGAAAAAGAAAATGCAGAGAAAGGCTAGGAAGGCAGCTCAAGGCTGTGTTGAGAAGGAAAGTCCAGAGGAAGCTGAGGAGGATTATAAAGAACCGGAGGAAGAAGATTGTATTAATGGTATGCAATCAAGTGTAGAATGTGTTGAAGATAAACTTAATACTTCATTGAGTGAAGGTGAATCAACAAAAACTGTTGAGAAGGATGTTTCACAAGGAAGTCATGGTCACAAGAGCCGTTCCAAGGGAAAGAAGTTGCTGGCGGCTGCTGATCTTAAGTGCAAGCTGGTTGATTTAGGTAGTGCTTGTTGGACTTATAAACAATTCACAAATGATATTCAGACAAGGCAATACAGGTGTCCTGAGGTTCTTCTTGGATCTAAATACTCAACTCCAGCGGATTTATGGTCCTTTGCTTGCATTTGCTTTGAGCTTGCCACTGGTGATGTTCTTTTTGATCCTCACAGTGGTGAAAACTATGATAGGGATGAAGTGGTGAAAACTATGATAGGGATGAGAGTAGTTGCTATACAATTCAATGCTGTACCTTTTCATGATCGTATAATTTTATGCTGGGAAATGCTTCAAAGCATACTTCTGCTGACTTTAAGATCATCTGGCATTGATGATGGAGCTTCTTGGAATGATGCCTCGCAAGAGAAGTATGATTTCAGTGATCAAGATGCAAATGACATGGCTGACTTCCTTGTTCCAATACTTGATTTTGTCCCTGAAAAGAGACCAACAGCTGCTCAGTGCCTTAGTCATCCATGGATCAGTGCAGGTCCTCGGACCCTTGAGTCCTCAATGACAATTTTGCGACTGGATGCCATCAATGAGGAATTGTCTGAAAAGAGGAAGAGGGAAAAGGCTGAGCAGGAGTTAGTGGAAGTTGGTGTGAGGAATATAGCCATTAATGGAACTCCTGAGTTACTCAAGGACTCCCAACCTCTAAAGTCATCGAAATAG 1680 0.4298 MERNGVSNDYSSEDEGTEGYRRGGYHAVRVGDIFKNGCYVVQSKLGWGLFPLSGSLGTLSIRCLLSPKNAFELHRSRYVALKIQKSAQHYTEAALDEIKILKQVAEGDHDDKKCVVKLLDHFKHSGPNGLHVCLVFEFLGDNLLTLVKYSGYRGVPLPMVKEICFHILVGLDYLHRELSIIHTDLKPENVLLLSLIDPYKDPRKSGAPLILPTTEDKAVSNNETTKDNKILNGDLMKNQKKKMQRKARKAAQGCVEKESPEEAEEDYKEPEEEDCINGMQSSVECVEDKLNTSLSEGESTKTVEKDVSQGSHGHKSRSKGKKLLAAADLKCKLVDLGSACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVLFDPHSGENYDRDEVVKTMIGMRVVAIQFNAVPFHDRIILCWEMLQSILLLTLRSSGIDDGASWNDASQEKYDFSDQDANDMADFLVPILDFVPEKRPTAAQCLSHPWISAGPRTLESSMTILRLDAINEELSEKRKREKAEQELVEVGVRNIAINGTPELLKDSQPLKSSK. 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04032 559 PANTHER PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED 456 518 - -
Seca3g04032 559 MobiDBLite consensus disorder prediction 299 313 - -
Seca3g04032 559 Gene3D Phosphorylase Kinase; domain 1 15 136 - -
Seca3g04032 559 SUPERFAMILY Protein kinase-like (PK-like) 71 504 IPR011009 -
Seca3g04032 559 MobiDBLite consensus disorder prediction 293 319 - -
Seca3g04032 559 Gene3D Transferase(Phosphotransferase) domain 1 137 497 - -
Seca3g04032 559 FunFam SRSF protein kinase 2 isoform X3 319 498 - -
Seca3g04032 559 ProSiteProfiles Protein kinase domain profile. 39 496 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g04032 559 SMART serkin_6 39 496 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g04032 559 Pfam Protein kinase domain 70 192 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g04032 559 Pfam Protein kinase domain 323 496 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g04032 559 ProSitePatterns Serine/Threonine protein kinases active-site signature. 180 192 IPR008271 GO:0004672|GO:0006468
Seca3g04032 559 MobiDBLite consensus disorder prediction 250 274 - -
Seca3g04032 559 Coils Coil 509 532 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04032 Seca-Chr3 75901789 75905442 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04032 2 545 EF-hand Containing Proteins AT5G22840 57.143 0.0 554
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Seca3g04032 Pkinase 6.7e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04032 K08832 - gmx:100790060 701.819