Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04029 ATGTCTCGCCGTGGTGGTGGTAGGCAATCCCAATCTCGCTATGATCAACCTTCTCTGGCCCAGTCTGTCGGAAGAGGCCGTGGTCGCGGCCGTGGACATGCACCCCCTCCGCCGTCGTCCGTTCCTCTTCCGTCTCCGGCGATCGGTTATTCCTCTGCCGCAGCGCCTGTTGCTGCCTCAAGTTCATCGTCCGTTCCTCTTCCGTATCCGGCGATCGATTCTTCCTCCGCTGCAGCGCCAGTTGCTGCCTCAAGTTCGTCGTCCCCGCTGCCGTCTCCGGTTCCAGTTGAAACTCTGACTTCAGAGGTTGAGCAGAAGCTCACATTGCAGTCGTCGGCTCCGTCGTCGACGAAGGCTTTCAGGTTCCCTGACCGGCCAGGTTACGGTACAGAGGGAAGGAAAATCCAAGTCCGAGCGAATCATTTTCAACTGCAAGTTGCTCAGTGCGATCTACATCACTACGATGTATCGATAACTCCGGAGATTCCTTCCAAGAAAGTGTCTAGAGATGTGCTGGGCCAGTTAATCCGCATGTATCAAGAGACACACTTGGGTAGGCGTGTACCCGCTTATGATGGACGAAAGAGTCTTTTTACTGCAGGTCCATTGCCCTTTTCCTCAAAGGACTTTGTGGTCAAGTTGGTTGACGATGACGAGCGAGGCTCGCCTTCTGGTTCTGCTAGAACAAAACGTGAGCGCGAGTTTAAGGTCACTATACGGTTCGCTGCAAGGGCTGACCTTCACCATCTTCAGCAGTTTCTCAGGTGCCAACAGCTGGACAGTCCACAGGAAACCATACAAGCGCTTGATGTTGTTTTGCGGGCAACACCTTCTGAAAAGTATAATGTTGTGGGAAGGTCCTTTTTTTCTCCTACTTTGGGGTCAACAGGTACACTGGGTAGTGGGACAGAATATTGGAGAGGATATTATCAAAGTCTTCGCCCAACCCAGATGGGACTTTCACTCAACATTGATGTTTCAGCGAGAGCTTTTTATGAACCAGTTCTTGTTACTGAATTTATTGCTAAACATTTTAGATTAAATTTTTCAAGGCCTCTGTCTGATCAAGATCGTGTTAAGGTTAAGAAAGCTCTGAGAGGTATAAAGGTGATACTTAGTCATGGCAAGTATATTAGAAGTTATAAAATTACTGGAGTTTCCAAAGAACCTCTCCAGGCTTTAATGTTTACACTTGATGACAAAAGAACAAAAGTTTCGGTTGTTCAATATTTCCGTGAGAAATACAATATTGTGTTAGAGTGTTTGGCTCTTCCTGCTCTCCAAGCTGGAAGTGACACAAAACCTATTTATTTGCCTATGGAGCTTTGTCAGATCACAGCTGGACAGAGATACACTAAAAGATTGAATGAAGAACAAGTGACTAATCTTCTAAGGGCTACCTGTCAGCGTCCTCATGAAAGGCAAAATTACATTAAACAGATTGTGAGGGAGCACAATTTCAACACAGACAAGTTTGTGCGTGAGTTTGGGATTAATGTAAGGGAGGATCTTGCATTGGTTAATGCCCGTGTTTTGCCTCCCCCAACGCTTAAATATCATGAATCAGGCAAAGAATCTAAAGTTGACCCAAGGATGGGTCAGTGGAATATGATTGACAAGAAAATGATTGATGGTGGCAAGGTGCAATATTGGACTTGCCTAAGCTTTTCAGCGAAAGTAAACAGAGAAAGAGACTGGACAGCTAGATTTTGTAGTGAATTGGTCAATATGTGTACCAGCAAGGGAATGCTATTCAATCGAGACCCTTTAATTCCCATAACTCCAGGTTACCCTAATCAAATAGAGACAGCACTCATGAACGTCCATAAGCAGAGCATGTCAAAACTTGCAAACTTGAAGCAGGGGGGGCCAATTCAGTTGTTAATTATAATTCTGCCTGATGTCAAGGGCTCTTATGGAAAAATAAAGAAAATATGTGAAACAGAACTGGGGATAGTATCTCAATGTTGTCAACCCAGGCAAGTTTTAAAGTTGAATAAGCAGTATCTTGAAAATGTAGCCCTGAAGATTAATGTGAAGGTTGGTGGGCGAAATACAGTATTAAATGATGCAATTGAAAGAAGAATCCCCCATGTGACTGATGAACCAACAATAATATTTGGTGCGGATGTTACACATCCACAGCCAGGGGAAGACTCAAGTCCTTCTATTGCTGCAGTAGTGGCTTCCATGGATTGGCCTTGGGTTACAAAGTATAGGGGAATTGTTTCTGCCCAGCATCACCGCCAAGAAATTATTCAGGATCTTTATAAAAAACATGAAGATTCTAAGAAGGGAGTTGTACATGCTGGAATTGTCAGGGAGTTAATCCGATCCTTCTATAAATCAACTGGGCATAAACCTCGAAGAATTATATTCTACAGAGATGGAGTGAGTGAGGGACAATTTAGTCAGGTTTTGCTTTATGAGATGGATGCAATAAGAAAGGCTTGTGCCTCGTTAGAGGATGGATATCTACCTCCAGTTACATTTGTGGTGGTACAGAAAAGACATCACACCCGTCTCTTCCCTGTTGATCGTAATCAGACAGATAGAAGTGGAAATATAATGCCAGGGACTGTTGTAGACACATCCATCTGCCACCCTCGGGAATTTGACTTTTATCTCAATAGCCATGCTGGAATTCAAGGAACTAGTCGACCAACTCATTATCATGTATTGTATGATGAAAACAAATTCACTGCGGATGAGTTGCAGATTTTGACAAATAATTTATGTTATACGTACGCAAGGTGTACTCGGTCGGTTTCAATAGTTCCTCCTGCATACTATGCACACTTGGCTGCTTTCCGAGCTCGCCACTACATTGAAGGTGAAACTTCGGAAGCTGGTTCTGCGAGTGGAAGTGGAAGTGGAGGTGGAAGCAGAAATACCAACTTCGAGGTGACACTGCCCTCAATCAAGGAAAATGTCAAAGAAGTAATGTTTTACTGCTGA 2958 0.4429 MSRRGGGRQSQSRYDQPSLAQSVGRGRGRGRGHAPPPPSSVPLPSPAIGYSSAAAPVAASSSSSVPLPYPAIDSSSAAAPVAASSSSSPLPSPVPVETLTSEVEQKLTLQSSAPSSTKAFRFPDRPGYGTEGRKIQVRANHFQLQVAQCDLHHYDVSITPEIPSKKVSRDVLGQLIRMYQETHLGRRVPAYDGRKSLFTAGPLPFSSKDFVVKLVDDDERGSPSGSARTKREREFKVTIRFAARADLHHLQQFLRCQQLDSPQETIQALDVVLRATPSEKYNVVGRSFFSPTLGSTGTLGSGTEYWRGYYQSLRPTQMGLSLNIDVSARAFYEPVLVTEFIAKHFRLNFSRPLSDQDRVKVKKALRGIKVILSHGKYIRSYKITGVSKEPLQALMFTLDDKRTKVSVVQYFREKYNIVLECLALPALQAGSDTKPIYLPMELCQITAGQRYTKRLNEEQVTNLLRATCQRPHERQNYIKQIVREHNFNTDKFVREFGINVREDLALVNARVLPPPTLKYHESGKESKVDPRMGQWNMIDKKMIDGGKVQYWTCLSFSAKVNRERDWTARFCSELVNMCTSKGMLFNRDPLIPITPGYPNQIETALMNVHKQSMSKLANLKQGGPIQLLIIILPDVKGSYGKIKKICETELGIVSQCCQPRQVLKLNKQYLENVALKINVKVGGRNTVLNDAIERRIPHVTDEPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPWVTKYRGIVSAQHHRQEIIQDLYKKHEDSKKGVVHAGIVRELIRSFYKSTGHKPRRIIFYRDGVSEGQFSQVLLYEMDAIRKACASLEDGYLPPVTFVVVQKRHHTRLFPVDRNQTDRSGNIMPGTVVDTSICHPREFDFYLNSHAGIQGTSRPTHYHVLYDENKFTADELQILTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARHYIEGETSEAGSASGSGSGGGSRNTNFEVTLPSIKENVKEVMFYC. 986
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04029 985 SMART DUF1785_2 282 334 IPR014811 -
Seca3g04029 985 MobiDBLite consensus disorder prediction 949 967 - -
Seca3g04029 985 Pfam Argonaute linker 1 domain 284 333 IPR014811 -
Seca3g04029 985 CDD PAZ_argonaute_like 337 445 - -
Seca3g04029 985 Gene3D paz domain 329 451 - -
Seca3g04029 985 MobiDBLite consensus disorder prediction 1 19 - -
Seca3g04029 985 Pfam Argonaute linker 2 domain 473 519 IPR032472 -
Seca3g04029 985 CDD Piwi_ago-like 491 943 IPR045246 -
Seca3g04029 985 FunFam protein argonaute 10-like 695 985 - -
Seca3g04029 985 MobiDBLite consensus disorder prediction 948 967 - -
Seca3g04029 985 Pfam Piwi domain 628 943 IPR003165 GO:0003676
Seca3g04029 985 Pfam N-terminal domain of argonaute 133 273 IPR032474 -
Seca3g04029 985 MobiDBLite consensus disorder prediction 1 72 - -
Seca3g04029 985 MobiDBLite consensus disorder prediction 55 70 - -
Seca3g04029 985 ProSiteProfiles Piwi domain profile. 627 944 IPR003165 GO:0003676
Seca3g04029 985 SUPERFAMILY PAZ domain 330 487 IPR036085 GO:0005515
Seca3g04029 985 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 114 945 - -
Seca3g04029 985 Gene3D - 511 690 - -
Seca3g04029 985 ProSiteProfiles PAZ domain profile. 335 447 IPR003100 GO:0005515
Seca3g04029 985 Pfam PAZ domain 360 464 IPR003100 GO:0005515
Seca3g04029 985 SUPERFAMILY Ribonuclease H-like 616 944 IPR012337 -
Seca3g04029 985 SMART PAZ_2_a_3 335 466 IPR003100 GO:0005515
Seca3g04029 985 Pfam Mid domain of argonaute 530 608 IPR032473 -
Seca3g04029 985 FunFam Argonaute 10 511 689 - -
Seca3g04029 985 Gene3D - 695 985 IPR036397 GO:0003676
Seca3g04029 985 SMART Piwi_a_2 627 944 IPR003165 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04029 Seca-Chr3 75848073 75854348 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04029 77 985 Eukaryotic Initiation Factors Gene Family AT1G48410 58.555 0.0 1097
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04029 K11593 - gmx:100799033 1324.69