Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04014 ATGGAATTCTACACCCGCAAATTGCTCCTAGTGAACGAGGACGTTCCGATCTCAACTTCCATTTCCCCTCTCCCTCACATCCAAGTCACCGAACCCACCGCCACAAACTCATCCTCACCGCGAGAATCAACAGCGACCTCGCCATCATCATCAACGTTTAGAAGCCCTCTGCAACTTCCCCTGCGTCCGATTTTCACTTCCAATGTCGCGTATACCTTCCTCGTCTTATTCACAACATTCTTCTTCCTTGCCTTCGTCCTCTTGTCCATTCATCAATTTTCATTCCGCCGTCGCCGCCGTCCTCCGTCGTCTTGCCAGGGTGGTGAAATCGCCGCCGGGAAGTCTCTGCCGGTAACTTCGTACCGCGGAGACGCGAAGCAAGTGGAGTGTGTGATATGTCTGGAGGAGTTCCGAGAAGGGGACATGGTGAAGGTGATTCCGTACTGCACGCACGTGTTTCACCCTGAATGTATTGACACGTGGCTCGCTGCGCACGTGACGTGTCCTATTTGCCGCTGCGCAAAGCTGTGCGGTGGGATCGCGGATGAGCGTGCGGAAGGATCGACGGCGGAGATTGAACGAGAAGAGGTGGGGTCAGGGTGA 603 0.5489 MEFYTRKLLLVNEDVPISTSISPLPHIQVTEPTATNSSSPRESTATSPSSSTFRSPLQLPLRPIFTSNVAYTFLVLFTTFFFLAFVLLSIHQFSFRRRRRPPSSCQGGEIAAGKSLPVTSYRGDAKQVECVICLEEFREGDMVKVIPYCTHVFHPECIDTWLAAHVTCPICRCAKLCGGIADERAEGSTAEIEREEVGSG. 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04014 200 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 109 176 IPR013083 -
Seca3g04014 200 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 36 173 - -
Seca3g04014 200 MobiDBLite consensus disorder prediction 28 55 - -
Seca3g04014 200 SUPERFAMILY RING/U-box 125 174 - -
Seca3g04014 200 ProSiteProfiles Zinc finger RING-type profile. 130 172 IPR001841 -
Seca3g04014 200 SMART ring_2 130 171 IPR001841 -
Seca3g04014 200 Pfam Ring finger domain 129 172 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04014 Seca-Chr3 75434772 75435374 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04014 65 176 C3H Transcription Factor Family AT2G27940 37.589 8.81e-24 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04014 - K10664 mtr:25492360 197.978