Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04012 ATGGCCATTGCTGGTCTGCGTAGTGTGTCTGTACTTGATCCTTCTTTCCTGAGAGACTCCCATTCTCAGTCATCCAGGAGAGGGGGAGATGGAAGAAGGGGAAGCACCCGGTCATCTTCACTCTTGCAAATGTGGCGAGAGATTGAGGATGAACATGTGGTGAGTCCAGTTCAAGGAAGAGCTGGTGAAGTACTACTTGAACAAAGGAGTGATGGATTGACTGCAGACCTCTCACAGGAGGATACAGTTGATAGCCAAGAATTAGGACAGGGGCATGTTTTAGAAGATGCAGTTTTGGGCGAGAATGAGTCTGAAACATGGTCACAGTCACAAAGTCAGAATGAATCCCATGATGGTCATGAGGATTTAAACAATTCCAGCTGTGAAAACTCTTCTGACTTGGGAGAAGTTGAAAGGGAAAGAGTGAGGCAAATCTTCAGGGAATGGATGAATAGTGGTGCTAGGGATCATGGATCAAACATTTCCCGAAGAAATAACAGTTCAAGGAGAGAATGGCTCGGTGAAACTGAGCAGGAAAGGGTGAGAATTATAAGGGAGTGGGTACAAATGAGTAGCCAGCAGAGAAGTGTTTCTTCTGGGGAAAACAGGGAAGAACTATCTGCTGAAATTGATATACAAATTGAACGTGTACGTGATGGACTTGTCATTAACCAGAATGAGGGCCAAACTGAGCATATGCGGAGGAGTATCCGTAAATTATGCGGCAGACAGGTTATGCTTGATATGCTCAAGAAGGCTGAGAGGGAAAGGCAAAGAGAAATTCAAGAGTTGTTGGACCATCAGGCTGTTTCTCATTTCCCCCATCGTAATCGCATCCAGGCATTGCTTAGAGGACGGTTCTTGAGGAATGATAGATCTGTTGACCATAACAGGTCCACTTCTGTTGCAGAAAGTGAGTTAGGCTTGTTGCGGCGAAGACAGACTGTATCAGGTCTAAGGGAAGGATTCTTCTCTAAAAAGGACAATACTGGTTGCAGTCAAGCAACTGGCAACCTATCTGATACCTCATCCAACATTGATGTTGATTTCAATACAAACGAACAAACTGGAGCAAGCAGTTCACATATGGTCCTTAGTGTACATTCTGGACAGTCTGAACCTAATAATAGAGGAAGTAATGGACTTGGGATATCAGATGGCCAGAACTGTTTACAAGGAACCACATGTGAGAATTTTGACCGGCAAGACTCTGCTGCTCATGCAGAAAGAGATCAGTTGCAGTGCTTGCAAATTGATCCAGAAGATCGGCAATCATCATTCAGTGTTGGGGTTGAAAGAATGGATGACACTGGCCAAAATGTTGTTGTGTTGCCAGTTGAAGATAGTGCTAATGAACTTACCCATCAAAGCTTACAAATTGAAAACTCAGAGAATAGTAATAATCAGGAATTCAGTGAGGTACATAACGAGCAATCTGAGCTGGGTAATATAGTTAATGGTGAAAATAATTCATCAAATCACAACAATCATATGGAGGTCAATATTGTTGATGACGTGAATTGGATTGAATCTGGTGCTCAAGAAGGAGAACAGACAGAAGATATTGAAAATGAAGTAAGTGGCTGGCTTCACAGTAACATTGAATGGCAAAATAGCACTGATGAAAGCATGGATGATAATCAGATCAGTCATACAACAAATGAGTGGCCTGAAAACAGTTTGGCAAATGAGGATGGAGAAAACTCTCGTCTGCAAGAAGCGCCTGAAGTGTGGCAAGAAGATGGCAGCTTCCAAGAGGCTGTGGAAAATTGGTTGGGAGGACCTTCGGATCATGAAAGTGCTCCAGGTGGTAGGGTTCATGGTTTTTATTTTCCTGATGATGACAATGTGTACAGTGTTGAACTCAGGGAACTTCTTAATAGGAGAAGTGTCTCTAATCTCCTTCACAGTAGTTTCCGTGAGAGTCTTGATCAGTTGATACAATCCTATGTTGAAAGGCAAGGTCATACTCACATTGAGTGGGAGCTGCAAGAAACAGCCCCTTCTTCTGCCTCGGTAGAACAGGACCTTGAGCAGCAGAGTAGAGATCAGATTGTTGGTCAGGAGGGTACTGTTAATAGTTCACTTGACTTGCCCTCCTTACCTATACCTCCTCCTCTACCACTTTGGGACCAGCACCCTCATCGTGACAACTGGACACATAATGACATAAATAATCAGCGCCTAGGAATTGTGCGTTCATGTTCTTTGGATTGGGAGATTATTAACGACTTGAGAATTGACATGGCTAGATTACAGCAAAGGATGAATAACATGCAGAGGATGCTGGAGGCCTGTATGGATATGCAGCTTGAGTTGCAGCGCTCAATAAGACAAGAAGTTTCTGCAGCTCTAAATCGCTCAGCTGGTTCATCAGGAATACATGACTTTGAGTCACCAGATGATAAATCTAAATGGGAATGTGTGAGAAAAGGACTTTGCTGTATTTGCTGCGAAAGCAATATTGATTCTTTGTTGTACAGATGTGGGCACTTATGTACTTGTTCGAAATGTGCCAATGAGTTGCTTCAAAGTAGAAGGAAGTGCCCTATGTGTCAAGCACCTGTGGTGGAGGTGATACGTGCTTATTCTATACAATAA 2601 0.4321 MAIAGLRSVSVLDPSFLRDSHSQSSRRGGDGRRGSTRSSSLLQMWREIEDEHVVSPVQGRAGEVLLEQRSDGLTADLSQEDTVDSQELGQGHVLEDAVLGENESETWSQSQSQNESHDGHEDLNNSSCENSSDLGEVERERVRQIFREWMNSGARDHGSNISRRNNSSRREWLGETEQERVRIIREWVQMSSQQRSVSSGENREELSAEIDIQIERVRDGLVINQNEGQTEHMRRSIRKLCGRQVMLDMLKKAERERQREIQELLDHQAVSHFPHRNRIQALLRGRFLRNDRSVDHNRSTSVAESELGLLRRRQTVSGLREGFFSKKDNTGCSQATGNLSDTSSNIDVDFNTNEQTGASSSHMVLSVHSGQSEPNNRGSNGLGISDGQNCLQGTTCENFDRQDSAAHAERDQLQCLQIDPEDRQSSFSVGVERMDDTGQNVVVLPVEDSANELTHQSLQIENSENSNNQEFSEVHNEQSELGNIVNGENNSSNHNNHMEVNIVDDVNWIESGAQEGEQTEDIENEVSGWLHSNIEWQNSTDESMDDNQISHTTNEWPENSLANEDGENSRLQEAPEVWQEDGSFQEAVENWLGGPSDHESAPGGRVHGFYFPDDDNVYSVELRELLNRRSVSNLLHSSFRESLDQLIQSYVERQGHTHIEWELQETAPSSASVEQDLEQQSRDQIVGQEGTVNSSLDLPSLPIPPPLPLWDQHPHRDNWTHNDINNQRLGIVRSCSLDWEIINDLRIDMARLQQRMNNMQRMLEACMDMQLELQRSIRQEVSAALNRSAGSSGIHDFESPDDKSKWECVRKGLCCICCESNIDSLLYRCGHLCTCSKCANELLQSRRKCPMCQAPVVEVIRAYSIQ. 867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04012 866 Coils Coil 742 769 - -
Seca3g04012 866 SUPERFAMILY RING/U-box 813 859 - -
Seca3g04012 866 Coils Coil 243 270 - -
Seca3g04012 866 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 800 864 IPR013083 -
Seca3g04012 866 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 449 866 - -
Seca3g04012 866 MobiDBLite consensus disorder prediction 101 137 - -
Seca3g04012 866 Pfam Zinc finger, C3HC4 type (RING finger) 811 858 - -
Seca3g04012 866 CDD mRING-HC-C3HC5_NEU1 814 863 - -
Seca3g04012 866 ProSiteProfiles Zinc finger RING-type profile. 814 853 IPR001841 -
Seca3g04012 866 MobiDBLite consensus disorder prediction 17 39 - -
Seca3g04012 866 MobiDBLite consensus disorder prediction 541 567 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04012 Seca-Chr3 75425649 75430996 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04012 814 860 C3H Transcription Factor Family AT3G06140 42.553 1.52e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04012 - - gmx:100801329 1290.02