Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04008 ATGGGACTGTCAAAGGACTGTCAACCTAGTCCCACTCAAACAACTGAGACTAGCAGTAGCTGTGTTTCACTAGCAGTTCAATCGAGATCCCCAGAACCAGATGTGCTTCCAAAGTCATTGAACAATGGAATGAAACACAGTACATCTCGTGGTAAGAGTCAAGGAAGACTAACTAGGAAGGATCTAGGATTGCATAAGTTGGTCTTTGAAGAAGATGTGTTGCCAGATGGAACTGAAGTAGCATACTATGCTCGTGGAAAGCAACTATTGGTAGGTTACAAAAGGGGCTTTGGAATTGTTTGTGGCTGCTGTGAGAATGAGGTCAGCCCTTCTCAGTTTGAAGCACATGCTGGTTGGGCATCACGACGGAAGCCTTACCTGCACATATACACATCTAATGGAGTCTCACTCCATGAGTTGTCCATCTCTTTATCTAAAGATCGAAGGATTTCTACCCGTGATAATGATGATCTCTGCAGTATATGTCGAGATGGAGGGGATCTTTTATGTTGTGATGGATGCCCAAGAGCTTTTCACATAGATAAGAGCCAGAATAACAAGTTTCAGTCATTCTCAATTGCAGATTGTGTTCCTCTTCCATGTATACCAAGTGATACCTGGTATTGTAAATATTGTCAGAATGTATTCCAGAAAGACAGATATGTAGCGCATAATGCGAATGCTCTAGCAGCTGGAAGGGTTGCAGGCGTTGATCCTATGGAACAGATAAACCAGAGATGCATTCGTATTGTCAAAACTCAGGAGGTTGACCATGGTGGATGTGCACTGTGCAGAGACCAAGATTTCAGCATAAGTTTTGGTCCTCGGACAGTAATTATTTGTGATCAGTGTGAGAGAGAATATCATGTAGGGTGTTTGAAGGATCATAACATGCAGATCCTAGAGGTATTACCTGAAGGGAATTGGTTCTGCTGCTCTGATTGTGATCAAATTCATACTGATATGCTAAATTTGGTGGCTCGTGGGGAAGAGAATCTTCCAGATTCCCTCTTGAGTTTGATTAAAAAGAAGCATGAGGAAAAAGGCTTAGAATCTGAGGCTGGTCTTGATATAAAATGGAGGATTCTGAACTGGAATTTGGATGCTTCTGATAAGAATAGGTCATTGCTTTCAAAGGCTGTTGCTATCTTCCATGAGCGGTTTAATCCTATAGTTGATTCTGCTTCAGGCCTTGATTTCATTCCAGCAATGCTTTATGGAAGGAAGATCAACAGTCAATATTTTGGCGGAATGTACTGTGCGGTGCTCACTGTCAACCAGGTGGTTGTTTGTGCTGGGGCATTTCGTGTTTTTGGGCAAGAAGTGGCAGAGCTTCCATTAGTGGCAACTACAACTGATTCCCAAGGACAGGGTTACTTCCAGTCCCTGTTTTCTTGCATTGAGAGGGTGCTTGGATCTTTAAAAGTGAGACACTTTGTCCTACCAGCTGCTGTTGAAGCTGAATCAATATGGACTGGTAAATTTGGGTTTACAAAGCTCGACAAAGATGAGATAAACAATTACAAGAGATATTATCGCATGATGATATTTCAAGGGACCTCGATGCTACAGAAGCCAGTTCCTGCACTCTAA 1593 0.4244 MGLSKDCQPSPTQTTETSSSCVSLAVQSRSPEPDVLPKSLNNGMKHSTSRGKSQGRLTRKDLGLHKLVFEEDVLPDGTEVAYYARGKQLLVGYKRGFGIVCGCCENEVSPSQFEAHAGWASRRKPYLHIYTSNGVSLHELSISLSKDRRISTRDNDDLCSICRDGGDLLCCDGCPRAFHIDKSQNNKFQSFSIADCVPLPCIPSDTWYCKYCQNVFQKDRYVAHNANALAAGRVAGVDPMEQINQRCIRIVKTQEVDHGGCALCRDQDFSISFGPRTVIICDQCEREYHVGCLKDHNMQILEVLPEGNWFCCSDCDQIHTDMLNLVARGEENLPDSLLSLIKKKHEEKGLESEAGLDIKWRILNWNLDASDKNRSLLSKAVAIFHERFNPIVDSASGLDFIPAMLYGRKINSQYFGGMYCAVLTVNQVVVCAGAFRVFGQEVAELPLVATTTDSQGQGYFQSLFSCIERVLGSLKVRHFVLPAAVEAESIWTGKFGFTKLDKDEINNYKRYYRMMIFQGTSMLQKPVPAL. 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04008 530 FunFam PHD finger family protein 357 526 - -
Seca3g04008 530 SUPERFAMILY FYVE/PHD zinc finger 252 312 IPR011011 -
Seca3g04008 530 PANTHER AUTOIMMUNE REGULATOR 25 527 - -
Seca3g04008 530 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 255 318 IPR013083 -
Seca3g04008 530 Gene3D - 357 525 - -
Seca3g04008 530 MobiDBLite consensus disorder prediction 1 27 - -
Seca3g04008 530 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 412 513 IPR016181 -
Seca3g04008 530 Pfam Tify domain binding domain 92 140 IPR032308 -
Seca3g04008 530 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 144 246 IPR013083 -
Seca3g04008 530 SMART PHD_3 260 316 IPR001965 -
Seca3g04008 530 SMART PHD_3 158 213 IPR001965 -
Seca3g04008 530 MobiDBLite consensus disorder prediction 1 57 - -
Seca3g04008 530 SUPERFAMILY FYVE/PHD zinc finger 145 214 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04008 Seca-Chr3 75377889 75382071 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04008 56 527 PHD Transcription Factor Family AT2G36720 55.063 0.0 535
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04008 - - aprc:113859749 839.336