Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04000 ATGATGCCAAAGGTCACAACTGCCTTCTCAAATTGCTCTCAAGGGCTGCAGATGTTTCCTGTGACTGAATATATGGTTTCACCCTCTCTTGAAGTCAACTCTGCCTCTGGTTCACATTCTAGTTCCCTCCTCTTCTATCTCTCTGATCTCAAAGACAAGCTTAGTCAGCTTCAGAATCTGGTTGCTGTTCTGGTCTCCCCTGAACCTGAGTCAACAACTTCCATGGCCATATCCAGCATGAACTCCACAATCCAAGAACTCATAGTTGCAGCTAGTTCAATGAGATTCACCTGCCAACAAATCGCTCAAGGTACTACTACTTGCACTAACGAATTTCGCCACCACCAATTTGATCATGATAAGTTACCACATCAATCAAACTTATTTGGCAATAATAATAGAAATAGAGGCATGCTTAATAACATGGGTTCAGATATTAGAGGGCAGAGTTTCTATTCTAGTAATTCTGAGGACTGGTTTACTGAAAGCTATAATAACCATGATCATAATAATAATAATAACATTAATTGTAACCTCAAGGATGATTATCAATGTGTGACAATATGTGAAGCCAACATACATAGTGAAGGAGGAATAATGTCACAATTAGGGGATGATGAAACGGATATAATAGAATTGGATGCTTCTGATTTGTTGGCAAGGTATACACATTTTTGCCAAGTTTGTGGGAAAGGGTTTAAACGAGATGCGAATTTGAGGATGCACATGAGGGCTCATGGGGATGAGTACAAAACAAATGCAGCCTTGAGCAACCCAATGAAAAACAGAGGGAGGTTAATATTGGGTGAGGGAAGTGGGTGTTTGAAGGCCAAGAAATATTCATGCCCTTATGAAGGGTGTAGGTGGAACCAAAAGCATGCAAAGTTTCAGCCTTTGAAGTCAATGGTTTGTGTGAAAAACCATTACAAGAGAAGCCATTGCCCCAAAATGTATGTGTGCAAGAGGTGCAACCAGAAACAGTTCTCTGTGCTTTCTGATTTGAGGACACATGAGAAGCACTGTGGGGACCCCAAGTGGCAGTGCTCATGTGGCACTACGTTTTCAAGGAAGGACAAGCTTATGGGTCACGTTGCTTTGTTCGTGGGACACACTCCAGCCAATAGCAGTGCTTCAGGATCAGCAAATTCAGAACAACACGCATTGCACTTGCAGCAGCAGATCGGTGTTGGAAGTTCATGA 1200 0.4208 MMPKVTTAFSNCSQGLQMFPVTEYMVSPSLEVNSASGSHSSSLLFYLSDLKDKLSQLQNLVAVLVSPEPESTTSMAISSMNSTIQELIVAASSMRFTCQQIAQGTTTCTNEFRHHQFDHDKLPHQSNLFGNNNRNRGMLNNMGSDIRGQSFYSSNSEDWFTESYNNHDHNNNNNINCNLKDDYQCVTICEANIHSEGGIMSQLGDDETDIIELDASDLLARYTHFCQVCGKGFKRDANLRMHMRAHGDEYKTNAALSNPMKNRGRLILGEGSGCLKAKKYSCPYEGCRWNQKHAKFQPLKSMVCVKNHYKRSHCPKMYVCKRCNQKQFSVLSDLRTHEKHCGDPKWQCSCGTTFSRKDKLMGHVALFVGHTPANSSASGSANSEQHALHLQQQIGVGSS. 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04000 399 ProSitePatterns Zinc finger C2H2 type domain signature. 226 246 IPR013087 -
Seca3g04000 399 Gene3D Classic Zinc Finger 222 295 - -
Seca3g04000 399 Gene3D Classic Zinc Finger 316 366 - -
Seca3g04000 399 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 34 380 IPR044300 GO:0010044|GO:0010447
Seca3g04000 399 SUPERFAMILY beta-beta-alpha zinc fingers 223 249 IPR036236 -
Seca3g04000 399 ProSiteProfiles Zinc finger C2H2 type domain profile. 224 251 IPR013087 -
Seca3g04000 399 SMART c2h2final6 224 246 IPR013087 -
Seca3g04000 399 SMART c2h2final6 280 313 IPR013087 -
Seca3g04000 399 SMART c2h2final6 318 340 IPR013087 -
Seca3g04000 399 MobiDBLite consensus disorder prediction 376 399 - -
Seca3g04000 399 FunFam Zinc finger 45-like 223 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04000 Seca-Chr3 75329350 75330549 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04000 40 377 C2H2 Transcription Factor Family AT5G22890 48.045 2.63e-105 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca3g04000 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04000 - - vum:124833786 430.254