Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03998 ATGGAAGAGGAACAACACATCGCGAAAGGCAAACGCACCAAACGGTTGAGGCTTTTGTCCCCTTGTGGTGCCACCGTCATGACATCTAGCTGCTCAAGCGGTGATAATAACAATGCTAATTCGTTTTCTTCAAATGAGAGCACTGATCAAGAAGAGGAAGACATGGCTAATTGCTTGATTCTCCTTGCTCAAGGACGAGGAGCCATATCTCATCATCATCAACAACATCAAGATCAAGGTAATAATAAGATCAGTAACCGAAAATTCGCTGAGGTAGCCACACCTTCCGCTACTCCCAATGGTACTATTAATACCAAAGTTGGTTTCTATATTTATGAATGCAAAACATGTAACCGAACCTTCCCTTCCTTTCAAGCACTCGGTGGCCACAGAGCAAGTCACAAAAAGCCTAAACTCGTGACTTCTGAGGAAAAGAAACCACCTCCACCGCCGTCACCGCCGTCTCCGCTGCTATCACAACCGAAAATGATTGCTAATTACGATGAGATTGGAGAAGCAGAGCAAATCCACATGAAAATTGGTCCTCCAATTTCACTTCAATTGGGGAATCAGAGTCACAGGGCTTTCCATGGAAACAACAAGGCTAAGATTCATGAGTGTTCAATTTGTGGCTCAGAATTCACATCTGGACAAGCATTGGGTGGTCACATGAGGAGGCATAGGGCGGCATCCACAAACATCACCACCACTGAGACAAGTTCTAACACCGCCATCGCAGCAAACAGGGAGGTTCAGCACCGGAATATTCTAGAATTGGATCTTAACCTTCCGGCGCCGGAAGATGACCTCCGGGAATCGAAGTTTCAGTTTCCGGCAACTCAAAAATCTATGGTGCTGTCGGCTGCTCCGGCTTTGGTGGATTGCCATTATTAG 894 0.4609 MEEEQHIAKGKRTKRLRLLSPCGATVMTSSCSSGDNNNANSFSSNESTDQEEEDMANCLILLAQGRGAISHHHQQHQDQGNNKISNRKFAEVATPSATPNGTINTKVGFYIYECKTCNRTFPSFQALGGHRASHKKPKLVTSEEKKPPPPPSPPSPLLSQPKMIANYDEIGEAEQIHMKIGPPISLQLGNQSHRAFHGNNKAKIHECSICGSEFTSGQALGGHMRRHRAASTNITTTETSSNTAIAANREVQHRNILELDLNLPAPEDDLRESKFQFPATQKSMVLSAAPALVDCHY. 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03998 297 Pfam C2H2-type zinc finger 112 137 - -
Seca3g03998 297 Pfam C2H2-type zinc finger 205 229 - -
Seca3g03998 297 ProSiteProfiles Zinc finger C2H2 type domain profile. 205 232 IPR013087 -
Seca3g03998 297 MobiDBLite consensus disorder prediction 29 50 - -
Seca3g03998 297 MobiDBLite consensus disorder prediction 128 160 - -
Seca3g03998 297 ProSitePatterns Zinc finger C2H2 type domain signature. 207 227 IPR013087 -
Seca3g03998 297 SUPERFAMILY beta-beta-alpha zinc fingers 111 227 IPR036236 -
Seca3g03998 297 MobiDBLite consensus disorder prediction 144 158 - -
Seca3g03998 297 ProSitePatterns Zinc finger C2H2 type domain signature. 114 134 IPR013087 -
Seca3g03998 297 PANTHER ZINC FINGER PROTEIN ZAT5 36 281 - -
Seca3g03998 297 SMART c2h2final6 112 134 IPR013087 -
Seca3g03998 297 SMART c2h2final6 205 227 IPR013087 -
Seca3g03998 297 ProSiteProfiles Zinc finger C2H2 type domain profile. 112 139 IPR013087 -
Seca3g03998 297 Gene3D Classic Zinc Finger 189 258 - -
Seca3g03998 297 MobiDBLite consensus disorder prediction 29 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03998 Seca-Chr3 75281535 75282428 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03998 3 297 C2H2 Transcription Factor Family AT2G28200 43.750 3.96e-64 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca3g03998 zf-C2H2_6 2.3e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03998 - - aprc:113858527 330.102