Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03984 ATGTTCCAAGTTCCAACAATGGATCTTCATCCAGAGACTCTGGTGCATATTAATGACTTTGAGCTGCATGACTTTGTCGATGATGCCAACTTTGATCAGTTTATCAATTCAATTCGTGGGGAGAATGAAGATGATATCTGTAGCTTCAGTTCTGACCTTCTGAATGGCTGCTTTGTTGATAACACATTCCTTTCATACCCTGCAAACCCATTTGACCAGTGCAATAGTAATTCTGTGAACGTTTATGATCCAAGCTCTACACTTAGCTCCTTCTCTTTTTTTGATGAAGAAGAACCCAAGGGAGAAAGTGGAGAAGCAGAAGAAGGGGAGAATTCTTCTGAAACAACAACCATCACCACTGCAACTACAAGTGTTAATACTAAGTCAAGGCCAAAAACTGATAGGTCTAAGACTTTGATTTCTGAGAGGAGGAGGAGAGGTCGAATGAAGGACAAGCTTTATGCATTGCGTTCTTTGGTTCCCAACATAACTAAGATGGATAAGGCCTCTATCATTGGAGATGCTGTTTCATATGTGTATGAGCTTCAAGCACAAGCCAAGAAGCTCAAGGCTGAGGTTGCAGGTCTTGAAACATCCTTATTAGTGTCTGAAAATTATCAAGGATCAATTGAAAACCCCATGAAGGTTCAATTCACTGACAACAGCCGTTCAATCTACAAGAAGATCATTCAGATGGACATGTTTCAAGTGGATGAAAGAGAGTTTTATGTGAAAATAGTGTGCAATAAGGGAGAAGGGGTGGCTGCCTCACTGTACAAGTCTCTTGAATCTCTGACAGGCTTCAATGTTAAGAATTCAAACTTGGCCACAGCTTCTGACAGTATTCTACTTACATTTTCATTGAATGTTAAAGGCTCAGAACCAGAAATTAACCTGCCCAATTTGAAGCTATGGGTGACTGGCGCTTTTCTGAACCAAGGCTTTCAATTCATACCTTCTTTTCACACTTGA 972 0.4043 MFQVPTMDLHPETLVHINDFELHDFVDDANFDQFINSIRGENEDDICSFSSDLLNGCFVDNTFLSYPANPFDQCNSNSVNVYDPSSTLSSFSFFDEEEPKGESGEAEEGENSSETTTITTATTSVNTKSRPKTDRSKTLISERRRRGRMKDKLYALRSLVPNITKMDKASIIGDAVSYVYELQAQAKKLKAEVAGLETSLLVSENYQGSIENPMKVQFTDNSRSIYKKIIQMDMFQVDEREFYVKIVCNKGEGVAASLYKSLESLTGFNVKNSNLATASDSILLTFSLNVKGSEPEINLPNLKLWVTGAFLNQGFQFIPSFHT. 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03984 323 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 133 182 IPR011598 GO:0046983
Seca3g03984 323 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 18 313 - -
Seca3g03984 323 MobiDBLite consensus disorder prediction 94 143 - -
Seca3g03984 323 Pfam Helix-loop-helix DNA-binding domain 140 183 IPR011598 GO:0046983
Seca3g03984 323 Gene3D - 124 199 IPR036638 GO:0046983
Seca3g03984 323 SMART finulus 139 188 IPR011598 GO:0046983
Seca3g03984 323 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 129 199 - -
Seca3g03984 323 Coils Coil 179 199 - -
Seca3g03984 323 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 130 198 IPR036638 GO:0046983
Seca3g03984 323 MobiDBLite consensus disorder prediction 110 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03984 Seca-Chr3 74914000 74916191 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03984 7 315 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G28160 52.665 1.18e-97 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca3g03984 HLH 7.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03984 K26214 - gmx:100778649 409.068