Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03983 ATGGAAGAAACCAAGGCACAGTTTCTTTCATCTCCTTCCCTCACCTCTCAATCCACTATGGAACTTGGAATTCAGAATAATTTCGGATGCAAGCATTACAGAAGGAGATGCAAGATCAGGGCACCGTGTTGTGATGAGGTTTTTGACTGTAGGCATTGCCATAACGAAGCTAAGAACTCTGAGGAGATTAATCCTCAGGATCGGCATGATATCCCACGCCATGAAATTAACAAGGTCATTTGCTCCTTATGTGACACAGAGCAAGATGTTCAACAGCACTGCATAAACTGTGGAGTATGCATGGGTAATTACTTTTGTGCTACATGCAAATTCTTTGATGATGATATTTCAAAGAACCAATACCACTGTGATGAATGTGGCATCTGCAGAACTGGAGGCAAGGATAATTTTTTCCATTGCAAGAGATGTGGATGCTGCTACTCCAAGGTAATGGAAGAGGGTCATCGTTGTGTAGAAAGAGCAATGCATCACAATTGCCCTGTTTGCTTTGAGTATCTATTTGATACAGTAAGAGATATCACCGTCTTACCTTGCGGGCATACTATACATTTAGAGTGTGTTAAAGAGATGGAACAACATCATAGGTTTTCATGTCCTGTTTGCTCAAAATCCATCTGTGACATGTCAAGTATGTGGAAGAAGCTTGACCAAGTGGTATGTAGATTACACTTTCTTTCTCTTTTATACTTTTAA 714 0.4034 MEETKAQFLSSPSLTSQSTMELGIQNNFGCKHYRRRCKIRAPCCDEVFDCRHCHNEAKNSEEINPQDRHDIPRHEINKVICSLCDTEQDVQQHCINCGVCMGNYFCATCKFFDDDISKNQYHCDECGICRTGGKDNFFHCKRCGCCYSKVMEEGHRCVERAMHHNCPVCFEYLFDTVRDITVLPCGHTIHLECVKEMEQHHRFSCPVCSKSICDMSSMWKKLDQVVCRLHFLSLLYF. 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03983 237 ProSiteProfiles Zinc finger CHY-type profile. 23 99 IPR008913 GO:0008270
Seca3g03983 237 ProSiteProfiles Zinc finger CTCHY-type profile. 101 165 IPR017921 -
Seca3g03983 237 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 16 226 - -
Seca3g03983 237 Pfam CHY zinc finger 30 111 IPR008913 GO:0008270
Seca3g03983 237 SUPERFAMILY CHY zinc finger-like 23 101 IPR037274 GO:0008270
Seca3g03983 237 SUPERFAMILY RING/U-box 165 215 - -
Seca3g03983 237 SUPERFAMILY Zinc hairpin stack 102 159 IPR037275 -
Seca3g03983 237 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 147 220 IPR013083 -
Seca3g03983 237 SMART ring_2 166 208 IPR001841 -
Seca3g03983 237 ProSiteProfiles Zinc finger RING-type profile. 166 209 IPR001841 -
Seca3g03983 237 Pfam RING-type zinc-finger 166 206 IPR027370 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03983 Seca-Chr3 74900105 74902913 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03983 28 227 C2H2 Transcription Factor Family AT3G18290 36.408 1.36e-38 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03983 K10144 - rcu:8275237 414.075