Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03978 ATGCTCGCATTGCATTTCCGACCATGCCTCTTTCCTTCATTCTCTCGTTGCTTTACCATTAGGGTTTCCCCTCTCTTCTCTCTCCCTTTCTCTTTCTCTTTCCCTCTCTCCTCAACTCCTCTCCGCGCCATGTCCAAGCCACCCTCCGCCTTCGACGCCCTCATGTCCGGCGCCCGCGCCGCCGCCGCCGCCGCCAAGAAGCAACAGCCATCCTCATCCCCCAGGAAAAGAAAATCCCCTCTCTCCCCCTCTCCCGCCCAAAACCCTAACAACCTCAAAACCCCCGAAACCCTCCAACAACCCAACAAATCACCGGAAACCGTTGAAACAGTTCAACAGCCCAACAAATCACCACCACCGCAGGAAACCGCCAAGGCTGAACCTCCGAACAAGATTAGCAAAGTGTCTTCTTCCCGGGAGATAATCGCTAAGCTGAAGGAGCGGGTTCCGCGGCTGAAGAAGAAGCCCTCGGAGTTCGATCCTAGCTCGGTTACATGCTGGGAGAAAGGCCAACCCGTGCCTTTCTTATTCCTCTCCTTGGCGTTCGACATGATCGCTGAGGAGACTGGACGAATTGTGATTACAGACATTGTGTGCAACCTGTTGAGGACTGTGATTCACGCCACTCCGGAGGATCTCGTGCCGGTTGTTTATCTCTCAGCGAACAGGATTGCTCCAGCGCACGAAGGGCTGGAATTGGGAATCGGCGACGCTTCCATTATCAAGGCACTTGCCGAGGCTTGTGGAAGGACTGAGTCGCAGATTAAGAATCAGTACAAGGAGAAAGGTGACTTGGGTTTAGTTGCCAAAGCGAGCCGTTCGTCTCAGTCTATGATGCGGAAGCCTGATGCATTGACTATTAGGAAGGTTTTCAACACCTTTCGCCTTATTGCCAAGGAATCTGGAAAAGACAGTCAAGAGAAGAAAAAGAATCATATAAAGTCACTTCTTGTCGCTGCAACTGACTGTGAACCTCTATATCTAATCCGTTTGCTACAGACAAAGTTGCGAATTGGATATGCTGAGCAAACACTCTTAGCTGCATTAGGCCATGCTGCAGTGTACACTGAAGAACATTCGAAACCACCTCCCGAAATTCAATCTCCTTTAGAAGAGGCTGCAAAGATTGTTAAACAAGTCTATTCTGTTCTTCCTGACTATGACAAAATAGTATCTGCACTGCTTAAGGATGGTGTGTGGATACTTCCAAAGACATGTAATTTTACTCCTGGTGTTCCAGTTGGGCCTATGCTGTCAAAAGCAACCAAGGGTGTCTCTGAAATTCTAAATAAATTCCAGGATGCTGAGTTTACCTGTGAATACAAATATGATGGGGAGCGTGCTCAGATACATTACATGGAGAATGGCTCAGTTGAGATTTACAGTAGAAATGCGGAAAGGAACACTGGGAAGTTTCCTGATGTTGTTGCTGCAGTTTCAAGGTTAAAGAAATCAACTGTATCATCATTTGTTCTTGATTGTGAACTGGTTGCATATGATCGTGCAAAACAAAAAATCCTTCCTTTCCAGGTGCTTAGTACCCGGGCTCGCAAAAATGTAACTATGAGTGACATAAAAGTTGATGTTTGTGTCTTTGCTTTTGATTTGCTGTATCTTAACGGCCAAGCACTTCTCCAGGAAAACCTGAAAATCCGTAGAGAGAATCTCTATGCCTCTTTTGAGGAAGAATCTGGATTTCTTCAGTTTGCAACAACAATAACATCAAATGATGTTGAGGAAATACAAAAATTTCTTGACAAAGCTGTTGATGCAAGTTGTGAAGGATTAATTATTAAAACATTAAATGAAGATGCCACATATGAACCTTCCAAGCGGTCACTCAACTGGCTAAAGCTGAAAAAAGATTATCTGGATAATATAGGGGACTCACTAGATTTGGTACCTATTGCTGCTTTCCATGGTCGTGGGAAACGCACAGGAGTCTATGGTGCCTTTCTCCTTGCTTGCTATGACAACAACAATGAAGAATTTCAAAGTATTTGTAAGATAGGAACCGGATTCTCTGAAGAAATGCTTGACGAACGTTCTACTAGCCTTCGCGCTAAAGTGATTCCCAAGCCAAAGGCATACTATCGATATGCTGAAACAATCAATCCTGATGTCTGGTTTGAAGCTAGTGAGGTGTGGGAGGTGAAAGCTGCAGACTTGACCATTAGCCCCGTTCACCGTGCTGCAGTGGGCATTGTAGATTCAGATAAGGGCATATCTCTTCGATTTCCACGTCTAGTTCGAGTTCGGCCTGACAAAGCTCCTGAACAGGCCTCATCATCTGAGCAGGTTGCTGAAATGTATAATGCTCAAAAACACAATCACACAAACAACCAAGATGACAATGATGATGATTGA 2367 0.4554 MLALHFRPCLFPSFSRCFTIRVSPLFSLPFSFSFPLSSTPLRAMSKPPSAFDALMSGARAAAAAAKKQQPSSSPRKRKSPLSPSPAQNPNNLKTPETLQQPNKSPETVETVQQPNKSPPPQETAKAEPPNKISKVSSSREIIAKLKERVPRLKKKPSEFDPSSVTCWEKGQPVPFLFLSLAFDMIAEETGRIVITDIVCNLLRTVIHATPEDLVPVVYLSANRIAPAHEGLELGIGDASIIKALAEACGRTESQIKNQYKEKGDLGLVAKASRSSQSMMRKPDALTIRKVFNTFRLIAKESGKDSQEKKKNHIKSLLVAATDCEPLYLIRLLQTKLRIGYAEQTLLAALGHAAVYTEEHSKPPPEIQSPLEEAAKIVKQVYSVLPDYDKIVSALLKDGVWILPKTCNFTPGVPVGPMLSKATKGVSEILNKFQDAEFTCEYKYDGERAQIHYMENGSVEIYSRNAERNTGKFPDVVAAVSRLKKSTVSSFVLDCELVAYDRAKQKILPFQVLSTRARKNVTMSDIKVDVCVFAFDLLYLNGQALLQENLKIRRENLYASFEEESGFLQFATTITSNDVEEIQKFLDKAVDASCEGLIIKTLNEDATYEPSKRSLNWLKLKKDYLDNIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDNNNEEFQSICKIGTGFSEEMLDERSTSLRAKVIPKPKAYYRYAETINPDVWFEASEVWEVKAADLTISPVHRAAVGIVDSDKGISLRFPRLVRVRPDKAPEQASSSEQVAEMYNAQKHNHTNNQDDNDDD. 789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03978 788 Gene3D - 625 787 IPR012340 -
Seca3g03978 788 MobiDBLite consensus disorder prediction 60 137 - -
Seca3g03978 788 Gene3D - 151 418 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Seca3g03978 788 MobiDBLite consensus disorder prediction 66 120 - -
Seca3g03978 788 MobiDBLite consensus disorder prediction 754 788 - -
Seca3g03978 788 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 73 788 - -
Seca3g03978 788 NCBIfam ATP-dependent DNA ligase 232 771 IPR000977 GO:0003910|GO:0005524|GO:0071897
Seca3g03978 788 SUPERFAMILY Nucleic acid-binding proteins 628 774 IPR012340 -
Seca3g03978 788 FunFam DNA ligase 625 784 - -
Seca3g03978 788 Pfam ATP dependent DNA ligase C terminal region 645 756 IPR012309 GO:0003910|GO:0006281|GO:0006310
Seca3g03978 788 CDD OBF_DNA_ligase_I 628 773 - -
Seca3g03978 788 Gene3D - 426 624 - -
Seca3g03978 788 CDD Adenylation_DNA_ligase_I_Euk 405 623 - -
Seca3g03978 788 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 408 626 - -
Seca3g03978 788 FunFam DNA ligase 151 418 - -
Seca3g03978 788 Pfam DNA ligase N terminus 174 349 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Seca3g03978 788 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 156 406 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Seca3g03978 788 MobiDBLite consensus disorder prediction 759 778 - -
Seca3g03978 788 FunFam DNA ligase 416 622 - -
Seca3g03978 788 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 440 448 IPR016059 GO:0003909
Seca3g03978 788 ProSiteProfiles ATP-dependent DNA ligase family profile. 522 658 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Seca3g03978 788 Pfam ATP dependent DNA ligase domain 416 620 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Seca3g03978 788 ProSitePatterns ATP-dependent DNA ligase signature 2. 594 620 IPR016059 GO:0003909
Seca3g03978 788 Gene3D DNA ligase/mRNA capping enzyme 445 570 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03978 Seca-Chr3 74824880 74835565 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03978 1 788 Core DNA Replication Machinery Family AT1G08130 66.541 0.0 1070
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03978 K10747 - gmx:100783155 1195.65