Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03953 ATGGGAAGAGCTCCATGTTGTGACAAAGCAACTGTTAAGAGAGGACCATGGTCACCAGAAGAAGACTCAAAGCTGAAGGACTACATCGACAAGCATGGAACTGGGGGGAATTGGATTGCTCTTCCTCATAAAGCTGGTCTCAAGAGATGTGGGAAAAGTTGCAGATTGAGATGGCTTAACTATCTCAGGCCCAACATTAAACATGGAGATTTCTCTGATGAGGAAGACAGAATAATTTGCAGCCTCTATGTTAATATTGGAAGCAGGTGGTCAATTATAGCTGCTCAGTTGCCAGGGAGGACTGACAATGATATCAAGAACTACTGGAACACCAAGTTAAAGAAAAAGCTCATGAGTTTGCTTCCTTTATCACATCAGAGAAAACCTTCATTTCCATCCTCCAATAATCAAAGCCCACAACCCTCTCAATCTTCTCATCCACTGCACAGAGACTACTACTACAGTCCAACAACAACCTTGTCCTTCACAGGTCTTGAACCCTGCAATATTTCACTTCCTTCAAGTAACTATGCTAATTATAATACCACCACAAGTTGCACAACAACCTCAGTTTCTGATCTCCCCTTTTACCAAAACCAAGAATCCATGGTTAGTGTTATGAGTCCCATGCAGCAATACTACCCTATATGCAGAGACAGCATGCTCATGTTTGGAAGTGAAGGAAGTTGCAGTTCCTCTGATGGAAGCTGCACTCAGGGCAGAGAGATCAAGCAAGAAGAAATTGGTTATCAGAGCTACATGTCCACTGGATTTGATGACTATAATACTAATAATAATCATAGTTTTATGCTTAGTTATAGCAGCATTAGTGATGGTGGTGAAAACATTAACCAATCTACAGAAAAATCAGGTGGAGGTGGGTGCTGTGGCCAAACTTTAACCCCATTTGATTATGGTGTTGAGGATATTAAGCAATTGATTAGTAGTAGTGGCAGCAGTGGCTTCAATATTGATGAAAACAAGAAGGAGGAGAAAGCCATGTACTACAACTACTATTGA 1020 0.4118 MGRAPCCDKATVKRGPWSPEEDSKLKDYIDKHGTGGNWIALPHKAGLKRCGKSCRLRWLNYLRPNIKHGDFSDEEDRIICSLYVNIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLMSLLPLSHQRKPSFPSSNNQSPQPSQSSHPLHRDYYYSPTTTLSFTGLEPCNISLPSSNYANYNTTTSCTTTSVSDLPFYQNQESMVSVMSPMQQYYPICRDSMLMFGSEGSCSSSDGSCTQGREIKQEEIGYQSYMSTGFDDYNTNNNHSFMLSYSSISDGGENINQSTEKSGGGGCCGQTLTPFDYGVEDIKQLISSSGSSGFNIDENKKEEKAMYYNYY. 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03953 339 PANTHER OS09G0431300 PROTEIN 1 285 - -
Seca3g03953 339 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Seca3g03953 339 Gene3D - 7 68 - -
Seca3g03953 339 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Seca3g03953 339 Gene3D - 69 146 - -
Seca3g03953 339 CDD SANT 71 111 IPR001005 -
Seca3g03953 339 FunFam Transcription factor MYB36 70 140 - -
Seca3g03953 339 SMART sant 67 115 IPR001005 -
Seca3g03953 339 SMART sant 13 64 IPR001005 -
Seca3g03953 339 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Seca3g03953 339 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Seca3g03953 339 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Seca3g03953 339 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Seca3g03953 339 CDD SANT 16 62 IPR001005 -
Seca3g03953 339 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Seca3g03953 339 MobiDBLite consensus disorder prediction 126 149 - -
Seca3g03953 339 FunFam Transcription factor RAX3 7 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03953 Seca-Chr3 74491396 74493453 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03953 1 118 MYB Transcription Factor Family AT5G57620 89.831 9.43e-78 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca3g03953 Myb_DNA-binding 4.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03953 K09422 - gmx:100779919 390.193