Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03951 ATGCAGAGATCAGGATATGGTGAGGATGGAATACACAGGTCCCTGAGGCCTGCCCTTGTGCTTCCAAAGGAACAAAACCTCTCCTTAGTCTCATTCCTCTTCTCCAGCGTCTCTTCTTTCCCAACCAAACCCGCCCTTATCGATGCTGACTCTTCCCAAACCCTTTCCTTCGCTCAACTTAAAATCCAAGTCGCCAAACTCGCCCATGCTTTTCTCCACCTCGGCATCAACAAAAACGACGTCGTTCTCCTCCTCGCTCCCAACAGCATCCATTTCCCCATATGCTTCCTCGCCGCAACCGCCATCGGCGCCGTCGTCTCCACCGCCAACCCTATTTACACCGTCGTGGAAATCTCGAGACAAGTCAATGACTCCAAACCGAAGCTGATTATCACAGTCCCTGAATTATGGAACAAAGTGAAGGGCTTCAACCTCCCTGCAGTCATAATCGGTTCTGTGAACGACACGAGTTCGAAGGTCACGAGTTTCAACGCGTTGATGGAGCTGGCAGGGTCCGTTACAGAGTTGCCGAAAAACGACGTGAAGCAGGGCGATACGGCGGCGCTTTTATACTCTTCGGGCACCACGGGGGTGAGCAAGGGGGTGGTACTCACGCACGGGAACTTCATCGCGGCGTCGCTTATGGTGGCCATGGACGACGATTTGGCTGGGGAGTTTCACAGCGTGTGCCTCTGCGTTTTGCCAATGTTTCACGTCTTTGGGTTATCGATCATCGTTTACTCGCAGCTCCGGCGAGGGAGTGCGGTGGTGTCAATGGCGAGGTTCGAGTTGGAGGCGTTTCTGAAGGCCATCGAGAAGCACAGAGTGACGAACCTGTGGCTGGTGCCTCCCATTGTGCTTGCTCTGGCGAAACAGAGTGTGGTTAGTAACTATGATCTTTCGTCGTTGAAGCGTATTGGGTCTGGTGCTGCTCCTCTTGGAAAAGAATTGATGGAGGAGTGTGCTAAACGTTTGCCTCACGTTACTGTTTTTCAGGGCTATGGTATGACAGAAACTTGTGGCATTGTTTCTGTGGAGAATCCAAGAGTAGGGATTCGTCATACTGGTTCAGCTGGAATGCTGGTGTCAGGAGTGGAAGCTCAAATAGTGTCTGTGAATAGTAATACACAGAAGCCGCTCCCTCCGAGACAATTGGGGGAATTATGGATTCGGGGTCCTAACATGATGCAAGGGTATCATAACAATCCAGAGGCCACAAGATTGACTTTAGATGAAAAAGGGTGGGTACATACAGGAGATCTTGGATATTTTGATGAGGATGGGCAACTCTTTGTTGTTGACCGTATCAAAGAGCTTATCAAGTATAAAGGATTTCAGGTTGCACCAGCAGAACTTGAAGGACTTCTCATTTCTCACCCTGAAATTCTAGATGCCGTTGTCGTCCCATATCCGGATGATGAGGCTGGTGAGGTTCCACTTGCTTATGTTGTTCGTTCACCCAACAGTTCACTTACTGAAGAAGAAATTAAGAAATTTATTGCTAATCAGGTAAGAAAAAGATAA 1524 0.4928 MQRSGYGEDGIHRSLRPALVLPKEQNLSLVSFLFSSVSSFPTKPALIDADSSQTLSFAQLKIQVAKLAHAFLHLGINKNDVVLLLAPNSIHFPICFLAATAIGAVVSTANPIYTVVEISRQVNDSKPKLIITVPELWNKVKGFNLPAVIIGSVNDTSSKVTSFNALMELAGSVTELPKNDVKQGDTAALLYSSGTTGVSKGVVLTHGNFIAASLMVAMDDDLAGEFHSVCLCVLPMFHVFGLSIIVYSQLRRGSAVVSMARFELEAFLKAIEKHRVTNLWLVPPIVLALAKQSVVSNYDLSSLKRIGSGAAPLGKELMEECAKRLPHVTVFQGYGMTETCGIVSVENPRVGIRHTGSAGMLVSGVEAQIVSVNSNTQKPLPPRQLGELWIRGPNMMQGYHNNPEATRLTLDEKGWVHTGDLGYFDEDGQLFVVDRIKELIKYKGFQVAPAELEGLLISHPEILDAVVVPYPDDEAGEVPLAYVVRSPNSSLTEEEIKKFIANQVRKR. 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03951 507 FunFam Long-chain-fatty-acid--CoA ligase FadD 13 437 - -
Seca3g03951 507 Gene3D - 11 437 IPR042099 -
Seca3g03951 507 ProSitePatterns Putative AMP-binding domain signature. 189 200 IPR020845 -
Seca3g03951 507 Pfam AMP-binding enzyme C-terminal domain 451 504 IPR025110 -
Seca3g03951 507 Pfam AMP-binding enzyme 36 442 IPR000873 -
Seca3g03951 507 CDD 4CL 41 504 - -
Seca3g03951 507 Gene3D - 438 507 IPR045851 -
Seca3g03951 507 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 8 505 - -
Seca3g03951 507 SUPERFAMILY Acetyl-CoA synthetase-like 21 504 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03951 Seca-Chr3 74421328 74425240 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03951 1 504 Monolignol Biosynthesis Gene Families AT4G05160 68.431 0.0 739
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03951 K01904 - gmx:100808944 800.816