Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03948 ATGCAGAGATCCGGTTACGGTCACGATGGAATATACAGGTCCCTAAGGCCTTCCCCGGTGCTCCCCAAGGACCCCAACCTCTCTTTAGTCTCGTTCCTCTTCTCCAACGTCTCTTCCGTCTCTTCTTTCCACACCAAACCCGCCCTCATTGACGCCGATTCCTCCCAAACCATTTCCTTCGCCCAACTTAAAATCCAAGTCTCCAAGCTCGCTCACGGTTTCCTCCACCTAGGCATCACAAAAAATGACGTCGTCCTCCTCCCCGCTCCCAACAGCATCCATTTTCCCATATGCTTCCTCGCCGCAACCGCCATTGGAGCCATCGTTTCCACCGCCAATCCCATTTACACGGTAGTTGAACTCTCAAGACAAGTCCACGACTCCAACCCCAAGCTAGTGATCACGGTCCCCGAATTATGGGACAAAGTGAAAGGTTTCAACCTTCCCGCAATGATCATTGGTTCTGAGAATGCCACGTGCTCCAAGATCATGAGTTTCAGCTCGTTGATGGAAGAGGCAGGGTCCGTTACAGAGTTGCCTGAAAACGACGTGAACCAGGGTGATACAGCGGTGCTTTTATACTCGTCGGGGACCACGGGGTTGAGCAAGGGGGTGGTACTAACGCACAGGAATTTCATTGCGGCGTCGCTCATGATGAGTATGGACGAAGATTTGGCAGGGGAGTTTGACAGCGTGTTCCTCTGCATTTTGCCGATGTTTCACCTATTTGGGCTCGGCATGGTGGTTTACACGCAGCTCAGGCGAGGGAGCGCGGTGGTGTCGATGGGGAGGTTCGAGTTGGAAGCGTTTCTAAAGGCAATTGAGAAGCACAGGGTGACAAATCTGTGGCTGGTGCCTCCCATCGTGCTTGCTCTGGCGAAACAGAGTGTGGTTAGCAAGTATGATCTTTCGTCGTTGAAGTATGTTGGGTCTGGTGCTGCTCCTCTCGGGAAAGAGTTGATGGAGGAGTGTGCCAGGCGTTTGCCTCATGTTACCGTTTTTCAGGTAATTCATCATCCCACCACCTGCTTAATGCTTTGGGCCATTCAGTAA 1053 0.5223 MQRSGYGHDGIYRSLRPSPVLPKDPNLSLVSFLFSNVSSVSSFHTKPALIDADSSQTISFAQLKIQVSKLAHGFLHLGITKNDVVLLPAPNSIHFPICFLAATAIGAIVSTANPIYTVVELSRQVHDSNPKLVITVPELWDKVKGFNLPAMIIGSENATCSKIMSFSSLMEEAGSVTELPENDVNQGDTAVLLYSSGTTGLSKGVVLTHRNFIAASLMMSMDEDLAGEFDSVFLCILPMFHLFGLGMVVYTQLRRGSAVVSMGRFELEAFLKAIEKHRVTNLWLVPPIVLALAKQSVVSKYDLSSLKYVGSGAAPLGKELMEECARRLPHVTVFQVIHHPTTCLMLWAIQ. 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03948 350 Pfam AMP-binding enzyme 41 332 IPR000873 -
Seca3g03948 350 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 9 331 - -
Seca3g03948 350 Gene3D - 10 347 IPR042099 -
Seca3g03948 350 SUPERFAMILY Acetyl-CoA synthetase-like 40 335 - -
Seca3g03948 350 ProSitePatterns Putative AMP-binding domain signature. 192 203 IPR020845 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03948 Seca-Chr3 74397804 74401612 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03948 1 343 Monolignol Biosynthesis Gene Families AT4G05160 61.032 2.09e-155 446
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03948 K01904 - gmx:100808944 460.685