Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03931 ATGGTTCTCCCAAACTTGTCTTCTTCTTCCTCTTCTCCTCCAACCAAGCAACCCAAACCCAGGAAAACTAAGACCCCTCTCCCTCTTAAAGCCAAGCAACCTTCTGTGACGGGCCACAAGGACCGCCACACCAAGGTGAATGGGCGAGAACGCCGTGTTCAGTTACCACCAATGTGCGCTGCTCGCATCTTCCAACTCACCAAAGAGTTAGGCTTCAAGAATGATGGCCAGACCATTGGGTGGCTCTTAAGCAAAGCTGAGCCCTCCATTATCGCTGCCACTGGCACCGGCATATTACCATCTTCCGTCGACAACTCAGACTCCGTAGCTGTTGCACCTGCATCTGAAGTACCTGAACCTGAACCTGCACCAGCACTTGCAACTGATGAGGACAAAACTGCTGTTGATCAGGAAGCAGAGGCGGTTGCCATGCCTGCAGCCATCAACCCTGAAGAAGAGTTTGATTCCGATTTTGATTGGTTAGTAAATTATGGTGTGGAGTTGGATGATGACCATGCATTGTTCCAATCATTCATGAAGCAGGTGGATTGA 552 0.5 MVLPNLSSSSSSPPTKQPKPRKTKTPLPLKAKQPSVTGHKDRHTKVNGRERRVQLPPMCAARIFQLTKELGFKNDGQTIGWLLSKAEPSIIAATGTGILPSSVDNSDSVAVAPASEVPEPEPAPALATDEDKTAVDQEAEAVAMPAAINPEEEFDSDFDWLVNYGVELDDDHALFQSFMKQVD. 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03931 183 ProSiteProfiles TCP domain profile. 39 93 IPR017887 -
Seca3g03931 183 MobiDBLite consensus disorder prediction 1 18 - -
Seca3g03931 183 Pfam TCP family transcription factor 38 108 IPR017887 -
Seca3g03931 183 MobiDBLite consensus disorder prediction 1 49 - -
Seca3g03931 183 MobiDBLite consensus disorder prediction 35 49 - -
Seca3g03931 183 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 16 124 IPR005333 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03931 Seca-Chr3 73788265 73788816 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03931 9 103 TCP Transcription Factor Family AT1G69690 52.041 1.29e-28 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Seca3g03931 TCP 4.4e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03931 - K16221 var:108322003 126.716