Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03930 ATGAATAAAAGAGAGGGACCGAATGAGAAAAAGAAGGTTGCTTTTGTTATAATTGTTGTATCATTCAGTTGCATTGTGGGGCAAGGGAATGGTGCTGATTCTGGTTCTAGCAGTGTTGGGGCTGAGATTGTCGCCCAGGAAATATACCAAAGCTTGTCCAATTATACCAAAATCTTCAGAGCTGCAATAAAAAAAGAGCTCGGTTTTTGCATAGTTGATGTGGATGCTGATTGGAATGAAGCTTTCAATTTCACCAAAGATCTAACCTTTTTGACCTTATGTGCCGCGCAAATGAAAGGAGATCTCACACAGCGTGTGTGCACAGCACCAGAATTAGAAGCCTATGCCCGAAGTTTTGCTGCAGGGGGCAAGTCAGATTCAAGCTCAAGCTCAAGTTCAAGCTCAGTCTCAAGCTCAAGCAGAACCAAATCCAACTTCTTGAAGCCAAACCTAAATTGTAATTTGAGCTCATGGCTTAATGGATGTGAGCCTGGATGGGGATGTAAAGCTAATCAGAAAGTAGACATTAACAGTAACAAGAAGGAAATGCCTCTTAGGTCTACTGATTGCAAACCTTGTTGTGAAGGTTTCTTTTGCCCTCGTGGTATCACCTGCATGATACCTTGTCCTTTGGGATCTTTTTGTCCACGTGCGCAACTTAATAAAACTAGTGGAATCTGTGAACCATATCGTTATCAGCTACCTCCTGGAAAGGAGAAACATACTTGTGGGGGAGCAGATATATGGGCAGACATTATGAGTAGTAGCGAGGTATTCTGTTCAGCAGGATCATTCTGTCCATCTACAATCATAAAAATTCCTTGCAATAAGGGGTATTACTGCAGAACAGGTTCTACTGCTCAAGAGCGGTGTTTCAGGTTGGCAACATGTGAGCCTAAATCAGCAAATCAAAATATTACTGCATATGGTGTCCTGGTTTTTGCTGGCTTGTGTTTCCTGCTTATTATCATATACAACTGTTCTGATCAAGTTCTTGCAACTCGAGAAAGAAGACAAGCAAAATCAAGAGAAAGGGCTGCTCAGAGTGTAAGAGAATCACAAGCACGTGAAAAATGGAAATCTGCAAAAGACATTGCTAAGAAACATGCAGTAGGACTGCAATCACAATTATCACGTACATTTTCTCGCAAAAAGACTTCGAGCAGGCCAGATTTGAAAGGTTTCGGTTCTAAACATTCAGATTCTAGCTTACCACCTGTGATGCCAGGAGGTGCTAGTACATCAAAAGGAAAGAAAAAGGATAAAAGCAACCTCACAAAAATATTAAATGATATTGAGCAAGACCCTGATAGTCAAGAAGGGTTCAATGTTCAGATAGGAGATAAAAATGTCAAAAAACAAGCACCAAGGGGAAAGCAGTTGCATACTCAGAGTCAAATTTTCAAGTATGCATATGGTCAGATTGAAAAAGAAAAGGCTTTACAGGAACAAACTAAAAACATGACCTTCTCTGGAGTAATTTCAATGGCTAGTGATATTGAGATAAGGAAGAGGCCTACCATTGAGGTTGCTTTTAAAGATTTAACCCTCACTTTGAAAGGGAAAAACAAACATCTATTAAGATGTGTGACTGGTAAATTATATCCTGGCCGAATTTCAGCAGTCATGGGTCCATCTGGTGCTGGTAAGACAACATTTCTCTCTGCTTTAACTGGGAAAGCAACTGGATGTCACACAACTGGCCAAGTTCTTGTAAATGGCCAGGAATCGTCTATTCGGTCATACAAGAAGATCATTGGCTTTGTGCCACAAGATGATATTGTGCATGGCAATTTGTCAGTGGAGGAGAATCTGTGGTTCAGTGCCAGATGCAGACTCTCTGCTGATCTACCGAAAGAAGAGAAGGTGTTGGTGGTTGAAAGAGTCATTGAATCTTTGGGGCTGCAGGCAATAAGGGATTCTCTGGTTGGGACAGTAGAAAAGAGAGGAATCTCGGGAGGTCAAAGGAAAAGAGTAAATGTAGGACTGGAAATGGTTATGGAACCTTCCCTTCTAATTTTGGATGAACCCACATCCGGTTTGGATAGTTCATCTTCTCAGTTACTGCTTAGAGCACTTAGACGTGAGGCTCTTGAAGGAGTCAACATATGTATGGTCCTTCACCAACCTAGTTACACCTTGTTCAAGATGTTTGATGATTTTATACTGCTTGCTAAAGGAGGTCTTACAGTGTATCATGGACCAGTGAACAAAGTGGAAGAGTACTTCTCAAGCATGGGGATTGTTGTCCCTGACCGTGTCAACCCTCCAGATTACTACATTGACATTTTAGAAGGAATATTAAAACCAAGTGCAAGCTCAGGAGTGAACTATAAACAACTACCTGTTAGATGGATGCTTCATAATGGGTACCCCGTGCCCATGGATATGCTACAGAATGTTGAAGGATTGACCACCCCAAGTGGTGATGGTTCAGCACACGGAACAGCCACCACTGCACCGGATGCTGAAGCACCTTCTTTTGCTGGAGAACTTTGGCAGGATGTAAAGTGCAATGTTGAGATGAAGAGGGACAACCTTCAACTCAACTTCTTAGCTTCAAACGATTTGTCCAATAGGACTACACCCGGTGTGCTCACACAATACAAATACTTTCTTGGAAGAGTTGGCAAGCAGAGGCTAAGAGAAGCTAGAACACAAGCTGTAGATTTTCTGATTTTGCTTCTAGCTGGCCTTTGCTTAGGAACACTAGCCAAAGTCAGTGATGAATCTTTTGGAGCAACCGGTTATACATACACTGTAATAGCAGTATCACTCCTTTCCAAGATTGCAGCTTTGAGATCATTTGCGTTGGATAAGTTGCACTATTGGAGGGAAAGTGCTTCTGGGATGAGTAGCCTAGCTTACTTTCTTTCAAAGGATACAGTTGACCATTTCAGTACAATTATCAAGCCTCTAGTTTATCTCTCCATGTTTTATTTCTTCAACAATCCAAGATCACCTGTCACAGATAACTACATGGTTCTGCTGTGTTTGGTGTATTGTGTCACCGGCATAGCTTATGTGTTGGCAATCTTCCTTCAACCAGGTCCAGCACAGCTGTGGTCAGTGTTACTTCCAGTAGTTTTGACTCTTGTAGCAACCTATGATAATGAAGAAGATAGCAAAATTGTGCGCTTTCTATCCGATTTGTGCTACACCAAGTGGGCTCTAGAAGCATTTGTAATATCAAATGCTAAAAGATATTCTGGAGTTTGGTTAATAAGTAGATGTGGTGCACTCTACCAAAGTGGCTATGATCTCAAACATTGGTACCAATGTTTAGTCCTCCTTATTGTGACTGGAATAATTAGTCGAATGCTGGCATTTTTTTGTATGATAACCTTCCAGAAGAAATAG 3360 0.414 MNKREGPNEKKKVAFVIIVVSFSCIVGQGNGADSGSSSVGAEIVAQEIYQSLSNYTKIFRAAIKKELGFCIVDVDADWNEAFNFTKDLTFLTLCAAQMKGDLTQRVCTAPELEAYARSFAAGGKSDSSSSSSSSSVSSSSRTKSNFLKPNLNCNLSSWLNGCEPGWGCKANQKVDINSNKKEMPLRSTDCKPCCEGFFCPRGITCMIPCPLGSFCPRAQLNKTSGICEPYRYQLPPGKEKHTCGGADIWADIMSSSEVFCSAGSFCPSTIIKIPCNKGYYCRTGSTAQERCFRLATCEPKSANQNITAYGVLVFAGLCFLLIIIYNCSDQVLATRERRQAKSRERAAQSVRESQAREKWKSAKDIAKKHAVGLQSQLSRTFSRKKTSSRPDLKGFGSKHSDSSLPPVMPGGASTSKGKKKDKSNLTKILNDIEQDPDSQEGFNVQIGDKNVKKQAPRGKQLHTQSQIFKYAYGQIEKEKALQEQTKNMTFSGVISMASDIEIRKRPTIEVAFKDLTLTLKGKNKHLLRCVTGKLYPGRISAVMGPSGAGKTTFLSALTGKATGCHTTGQVLVNGQESSIRSYKKIIGFVPQDDIVHGNLSVEENLWFSARCRLSADLPKEEKVLVVERVIESLGLQAIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICMVLHQPSYTLFKMFDDFILLAKGGLTVYHGPVNKVEEYFSSMGIVVPDRVNPPDYYIDILEGILKPSASSGVNYKQLPVRWMLHNGYPVPMDMLQNVEGLTTPSGDGSAHGTATTAPDAEAPSFAGELWQDVKCNVEMKRDNLQLNFLASNDLSNRTTPGVLTQYKYFLGRVGKQRLREARTQAVDFLILLLAGLCLGTLAKVSDESFGATGYTYTVIAVSLLSKIAALRSFALDKLHYWRESASGMSSLAYFLSKDTVDHFSTIIKPLVYLSMFYFFNNPRSPVTDNYMVLLCLVYCVTGIAYVLAIFLQPGPAQLWSVLLPVVLTLVATYDNEEDSKIVRFLSDLCYTKWALEAFVISNAKRYSGVWLISRCGALYQSGYDLKHWYQCLVLLIVTGIISRMLAFFCMITFQKK. 1120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03930 1119 Gene3D - 499 748 IPR027417 -
Seca3g03930 1119 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 469 1106 - -
Seca3g03930 1119 MobiDBLite consensus disorder prediction 121 144 - -
Seca3g03930 1119 Pfam ABC transporter 530 679 IPR003439 GO:0005524
Seca3g03930 1119 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 510 751 IPR003439 GO:0005524
Seca3g03930 1119 MobiDBLite consensus disorder prediction 122 144 - -
Seca3g03930 1119 MobiDBLite consensus disorder prediction 376 422 - -
Seca3g03930 1119 ProSitePatterns ABC transporters family signature. 651 665 IPR017871 GO:0005524|GO:0016887
Seca3g03930 1119 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 511 749 IPR027417 -
Seca3g03930 1119 CDD ABCG_EPDR 508 734 - -
Seca3g03930 1119 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 24 - -
Seca3g03930 1119 FunFam ABC transporter G family member 24 504 746 - -
Seca3g03930 1119 SMART AAA_5 536 737 IPR003593 GO:0016887
Seca3g03930 1119 MobiDBLite consensus disorder prediction 341 362 - -
Seca3g03930 1119 Pfam ABC-2 type transporter 708 1119 IPR043926 GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03930 Seca-Chr3 73769444 73775628 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03930 537 732 Calmodulin-binding Proteins AT2G36910 28.372 1.72e-11 67.0