Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03923 ATGAGCAGCTTAAGGCCTGAATTGCATGTTGCACAACAACTTCGGCGTGACAAATTGAGGATCCAGCATTTGCAAGAGTTCCCTAACAACCTCGAACAACTATCATTACACCCAGGGTACAACTTGGATCTTCTTCAAGTCAGGAACGTTAGAAATGGCGGCAACATGCTTGATGTTGATGAGGCACCACCTCTTTATCCATCGGAAATGATAACTTCTTTTTCATCCACGCCCAATCCTTTATCTGCTCCTCCTAGGAACACGTTCGAGTGTCATGAACCTCAACCTCAACCTGAACCCACTAGGCTAATGATGCCTCCTCCTTCTCACCATCACTATGGTTCATTTCCCCAGTCATCTTCTAACAATATTCATTCCTCCCCAAAAGAACACTTGGGTAATTGGAGACGCAGTGGCCCCCATCAAGTCTCTGATTGGATGGTGAATTATGCAAACACTTCTTCTGTGGCTAATGAAAGCAACCCCAACTCTTTCTTGGCTTCTGAGCTCAATAATGTGTCCCCTACTAATAACCATCACTATGGGAAGCCTAGCTGTAATGTTAATGTACTCACGGATGTGCAGTCTTCTCCTCCACCTCCACTTTACCACAATGCTTTGCAGGATATTTTCAAGTCTCCTAATGCTCATGGCTCAGAAATGGCTTCCCTCATCCAACATGGCATTTGGGGAGGGAATACTAATGAGCCATTGCTTCATGGAGATAATCAGTTTCGTTTTGGGAATGCTAATTTATGGACAAATCGTGGTGTTGGAAATAGTACTACTCCCTTGGGTTTCACTGACAAAAAGATTAGTAATGAATTACAAAACACTAGCCATGTCTTGAGTGATTGCAACCCTCAAGGTCTATCCTTGTCACTTTCATCAAATTCACAATCCAAGCCTTCTTCTAATTTTGAACAAGGGACTGCAACAGCAACAGAAGACCCTCAATATTCAAAGTCTATCATGAAGCCATCTATAGTTTCTAGAGATTGTGGGAAATCACTCCATCAAGATCACCCCTTGGGAACACCTTCTGGTTACCGTAATGTTGGTCCACTTGGTCCCTTCACTGGGTATGCTACCATTCTGAAGAGTTCAAGGTTCTTGAAGCCTTGCCAACAGCTGTTAGATGAATGCTGCCGTCAATGTGGGAAAAAATTTGGGAAATCTTGTGATGTTCCAGAATGGGTGTCTAGAGAAGCCAGTGTAATTTCTACTTGTGCTGCTGAAAGTGGGGTTGCAGCAAAAGGTAGTAGTAATTCAGGTGGTTCATCCTCTATGTTGTATGTTTCAAAGGAAAATAGTGCTGATGGCGGAGCTGGAAGCAGTAATGACTTTTGTCTTTCTTCTCGGCCGGGGTGCCAAAAGAATAAGGCAAAACTACTGTACATGCAAGAGGAGGTTAGTAGGAGATACAAGCAATACCATCAACAAATGCAAATGGTTGTTTCATCCTTTGAGTCAGTAGCGGGTCTTAGCTCTGCTACCCCTTATGTTTCCTTGGCTCTCAAGTCAGTATCAAGACACTTCAGGTGCCTAAAAAATGCTATCTTAGATCAACTCAAACTTACATGTGAAGTATTGGGAGAGGACTTCTCAGTTATACCAAGCACAAGTCCTAGTAGTAAAATTGACAATAATATTGCAAGGCTAAGATGCATGGATCAAAGCTATCAGAAGAACAAATCTGGAGGGGGTAACATAGACTTTCTTGAATCCCAACAACACGTATGGAGGCCCCAGAGAGGGTTACCAGAACGTTCAGTGGCAATTCTTAAAGCTTGGTTATTTGAGCATTTCCTTCATCCGTACCCCACGGACACTGATAAACACATGTTAGCTACTCAAACAGGTCTTTCACGAAACCAGGTATCAAATTGGTTCATAAATGCTCGAGTCCGTGTGTGGAAGCCAATGGTTGAGGAAATACACATGCTTGAAACGAAAGGCATGACAGAAGCCCACAAGAACGAGGGAGCTTCTGCCTCTGAAGGTAGTAGTAGCCATCAGCCTAGAGTTGATCAGCCAGTGAGCAAATTCGTTGGTACGAATGCAATCTCTGAAAAGCAATTTCAGTGTTTGGAAATGGGGTCATCCTCAGCAGGCACCAATGAGGAAAAGGGAACAAATGAAGAACAATGGAATCAAGAAAAGAGGTCTAAATTAGAATGTGAGATTACACCAAGCATGGATGGAACAATGATGGGCTTTATGCCATACCGACGTGGTGGGCTTGAGGTTGGGGGACTTGGATCTGTGTCACTAACTCTGGGTCTGAGGCACGGTGTTGAAGGTGTACAACACCAGCAGTTACAGCACGAAGAGGATTTTAGGCGTCAATTTGGAGGGCACATGATCCATGACTTCGTGGGCTAG 2385 0.4382 MSSLRPELHVAQQLRRDKLRIQHLQEFPNNLEQLSLHPGYNLDLLQVRNVRNGGNMLDVDEAPPLYPSEMITSFSSTPNPLSAPPRNTFECHEPQPQPEPTRLMMPPPSHHHYGSFPQSSSNNIHSSPKEHLGNWRRSGPHQVSDWMVNYANTSSVANESNPNSFLASELNNVSPTNNHHYGKPSCNVNVLTDVQSSPPPPLYHNALQDIFKSPNAHGSEMASLIQHGIWGGNTNEPLLHGDNQFRFGNANLWTNRGVGNSTTPLGFTDKKISNELQNTSHVLSDCNPQGLSLSLSSNSQSKPSSNFEQGTATATEDPQYSKSIMKPSIVSRDCGKSLHQDHPLGTPSGYRNVGPLGPFTGYATILKSSRFLKPCQQLLDECCRQCGKKFGKSCDVPEWVSREASVISTCAAESGVAAKGSSNSGGSSSMLYVSKENSADGGAGSSNDFCLSSRPGCQKNKAKLLYMQEEVSRRYKQYHQQMQMVVSSFESVAGLSSATPYVSLALKSVSRHFRCLKNAILDQLKLTCEVLGEDFSVIPSTSPSSKIDNNIARLRCMDQSYQKNKSGGGNIDFLESQQHVWRPQRGLPERSVAILKAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPMVEEIHMLETKGMTEAHKNEGASASEGSSSHQPRVDQPVSKFVGTNAISEKQFQCLEMGSSSAGTNEEKGTNEEQWNQEKRSKLECEITPSMDGTMMGFMPYRRGGLEVGGLGSVSLTLGLRHGVEGVQHQQLQHEEDFRRQFGGHMIHDFVG. 795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03923 794 MobiDBLite consensus disorder prediction 662 677 - -
Seca3g03923 794 MobiDBLite consensus disorder prediction 658 678 - -
Seca3g03923 794 Gene3D - 584 646 - -
Seca3g03923 794 SMART prehox3 360 522 IPR006563 -
Seca3g03923 794 MobiDBLite consensus disorder prediction 701 722 - -
Seca3g03923 794 MobiDBLite consensus disorder prediction 112 137 - -
Seca3g03923 794 CDD homeodomain 581 642 IPR001356 GO:0003677
Seca3g03923 794 MobiDBLite consensus disorder prediction 113 129 - -
Seca3g03923 794 Pfam Associated with HOX 365 520 IPR006563 -
Seca3g03923 794 MobiDBLite consensus disorder prediction 293 322 - -
Seca3g03923 794 FunFam BEL1-like homeodomain protein 9 584 646 - -
Seca3g03923 794 Pfam Homeobox KN domain 598 637 IPR008422 GO:0003677|GO:0006355
Seca3g03923 794 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 221 667 - -
Seca3g03923 794 SMART HOX_1 581 645 IPR001356 GO:0003677
Seca3g03923 794 SUPERFAMILY Homeodomain-like 583 647 IPR009057 -
Seca3g03923 794 ProSiteProfiles 'Homeobox' domain profile. 578 641 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03923 Seca-Chr3 73653650 73662487 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03923 366 764 Homeobox Transcription Factor Family AT4G34610 37.406 3.77e-65 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Seca3g03923 POX 7.3e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03923 - - vum:124831694 858.211