Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03918 ATGATTCATCTTTGGTTTGTTGCTTTGATGTGCTTAAGTGTATGCTCTGCTCAACTGTATTATGACCCTTCTAATTGTACTTCAAATGAACTTTCCCCTGGGTCAAGGTACACTTGCAATTCAACAAAGGTTTCATGCAAAACATACTTGGTGTATAGAGCAAATGAACGTTTCCAGACCATTTCAGATGTCTCAAAGCTCTTCAACATGAACTCTGATGAGGTGCTTCATCTAAACAACCTCACATCTTCTTCTCAGGTACTTAAACAAGGACTATTGAATTATCTCACACTAACTGAGGAAAACCTTTCACAAGGTGATAAGCCTGAAGTTGGTTCTGAGCTTCAAGTTCCTCTTAGATGTGCATGCCCTGAAAACTTCTCCAGTAGTAAGGGGGTGAAGTATCTTGTTACATACCCTCTAATACTAGGAGATGATTCAGATAAATTGAGTGAGAAATTTGGCATTTCACCTGAAGATTTCTTGGAAATGAATAATTTGAACACCTTATCAACTCTTTACCCAGAGACAGTTGTTTTAATTCCAATAAGGGATGGTCCAATTAGAATATTTGACATTCCAGATTCCCCTTCTCCACCTCCTGGTTTTCTTCCCACAAATCCAGTGGTTAAGGCACAGAAATCCACACAACCATCAAATTTGTATATTGCAGGATCTATTGTGGGATTTTTGTTGTTCATTACATTGTTGGCAAGTGGACTTTACATGAAGAGGTTGAGGAAAAGTGATGCTGTTCACTCCTTCAATCCAACAAATTCCCCTAACTTGTGGTCACCAATGAGAAGCTCTACAACTTCATGCCTATCTCCAGATCTTCTTGTTGGGATAAAGTACTGCTTACTCAATTACCGCTTAGAAGAGCTTGAAAAGGCCACAAAAAATTTCAGTGAAGAAAACAAAATTGGTGATTTAGTCTATAAGGGCTTAATCAACAATATTGAGGTGATGATAAAGAGGATGAGGTTTGAAGACACAGGCCAGGTAATTGATTTACATTCCAAAATCAATCACATTAATATTGTGAACCTACTTGGTGTTTGTTATGGTGAGAGCAATGCTTCATGGTCTTATTTAGTATTTGAGTTTCCTAAAAATGGTTGCTTGAGGGACTGTATATCTGATCCATGCAATCCTCTAAATTGGTACAGAAGGACACAAATAGCCTTTGATATTGCAACATGTCTTTACTATTTACATTACTGTTCTTTTCCTTCTTATGCTCACATGAAAGTCAGTAGTAGAAATATATTCATAACAGCAAACTGGAGAGGAAAACTTGCAGATGTTGGTGGGGCATCTGCTGCTAATGCCACACCCACAAAGAGAAATGAAAATACAGAGATTCCAAAAGGGTGGATGGCACCAGAGTACTTCCTGCATGGTTCAGTTTCTGAAAAAGTTGACATCTTTGCATTTGGGGTTGTCTTGCTTGAGTTGATCTCAGGAAGAGACAACTTTGATGGAAAATCAATCAAAGATTCTCTTGGATTTTTATTGGGGGAAGCCAGTGAAGGGGGTTGTTTTGAAGGGTTAAGGAGTTTCATGGATCCTAATCTGAAGGATTATTCTCTTCCAGAGGCTTTATGTTTGGCATTTTTAGCAAAGGATTGTGTGGCAGATGATCCACTGCATAGGCCTACTATGGATGATATTATGAAAGTTATTGCAAAAATGGTCTAG 1701 0.3827 MIHLWFVALMCLSVCSAQLYYDPSNCTSNELSPGSRYTCNSTKVSCKTYLVYRANERFQTISDVSKLFNMNSDEVLHLNNLTSSSQVLKQGLLNYLTLTEENLSQGDKPEVGSELQVPLRCACPENFSSSKGVKYLVTYPLILGDDSDKLSEKFGISPEDFLEMNNLNTLSTLYPETVVLIPIRDGPIRIFDIPDSPSPPPGFLPTNPVVKAQKSTQPSNLYIAGSIVGFLLFITLLASGLYMKRLRKSDAVHSFNPTNSPNLWSPMRSSTTSCLSPDLLVGIKYCLLNYRLEELEKATKNFSEENKIGDLVYKGLINNIEVMIKRMRFEDTGQVIDLHSKINHINIVNLLGVCYGESNASWSYLVFEFPKNGCLRDCISDPCNPLNWYRRTQIAFDIATCLYYLHYCSFPSYAHMKVSSRNIFITANWRGKLADVGGASAANATPTKRNENTEIPKGWMAPEYFLHGSVSEKVDIFAFGVVLLELISGRDNFDGKSIKDSLGFLLGEASEGGCFEGLRSFMDPNLKDYSLPEALCLAFLAKDCVADDPLHRPTMDDIMKVIAKMV. 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03918 566 ProSiteProfiles Protein kinase domain profile. 231 566 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g03918 566 Gene3D Phosphorylase Kinase; domain 1 282 369 - -
Seca3g03918 566 Pfam LysM domain 148 182 IPR018392 -
Seca3g03918 566 ProSiteProfiles LysM domain profile. 137 181 IPR018392 -
Seca3g03918 566 SUPERFAMILY Protein kinase-like (PK-like) 284 561 IPR011009 -
Seca3g03918 566 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 90 564 - -
Seca3g03918 566 Pfam Protein tyrosine and serine/threonine kinase 334 559 IPR001245 GO:0004672|GO:0006468
Seca3g03918 566 Gene3D Transferase(Phosphotransferase) domain 1 371 566 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03918 Seca-Chr3 73497520 73499887 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03918 37 566 Receptor kinase-like Gene Family AT2G33580 29.450 4.66e-61 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Seca3g03918 PK_Tyr_Ser-Thr 6.5e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03918 - - lja:Lj1g3v4047410.1 865.144