Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03908 ATGGCTTCTGGTAATTCAAGATTTGTAAGTTTTCAAGATGATACTGAACTAGTAAAACTCCCAACAACTAATGATGACAATGGAAACAAGCTTAATGGAGCACAAGTGATTGAGCCTAGTGCCAAAAAGGCTCAGAAGAAGGAGATAAAGAAGACAGGGAAGTTCTTGAAAGCTAGAGTGTTGTCAAGAGTGTTCTCAGAGGACTATGAGAGAGTAAGAAGAAGAATATTAGATCCCAGGGGACAAGTCATTCATCGATGGAACAAGATTTTCTTGGTAGCATGTTTAGTTTCTTTGTTTGTGGATCCTCTATTCTTTTATTTACCACTAGTTCGAGATGAAGTATGCATTGATATTGGAATAGCACTTGAAGTTATCCTCATAATGATCAGATCAATGGCAGATGTATTTTACATAATTCAGATTCTCATGAAGTTTCGTACAGCTTATGTGGCTCCTTCTTCCCGGGTATTTGGGAGAGGAGAACTTGTTATAGACCCTTCTAAGATAGCAACTAGGTACCTCAGCAAGGGTTTCTGGTTAGACTTCATTGCTGCTTTGCCCCTTCCTCAGGTGTTAATTTGGATTGTTATCCCCAATCTTGGAGGTTCAACCATGACAAACACAAAGAATGTCCTTCGGTTTATCATCATTTTCCAATACTTGCCAAGGCTATTTCTGATTTTTCCACTTTCATCCCAAATTGTAAAAGCTACAGGGGTTGTGACAGAAACAGCATGGGCAGGGGCTGCTTACAACTTGATGCTTTACATGTTGGCTAGCCATTTTTTAGGAGCTAGCTGGTATCTTCTATCAATTGAACGACAAGAAGCATGCTGGAGGAGTGTCTGTGAGCTGGAGAAGGCATCTTGTCAATATGGATTCTTTGCCTGCAACAGGGTTAAAGATTCTCACAGGGTTTCCTGGTTTATGACAAGTAATGTCACAAATTTATGCTCACCAAATGCTAACTTCTATCAGTTTGGTATATACGGTGATGCAGTGACATCTAGAGTTACAACCTCAGCCTTCTTTAATAAGTACTTTTTTTGTCTGTGGTGGGGCCTAAGGAATCTGAGTTCTTTGGGACAAGGCCTCCTTACTAGCACTTATGTTGGAGAAATAATGTTTGCCATTATTGTTGCAACTCTTGGATTGGTTCTCTTTGCATTGCTGATCGGTAATATGCAAACATACCTCCAATCCACAACTGTCCGGTTAGAAGAATGGAGGGTGAAAAGAACTGATACAGAGCAATGGATGCGTCACAGGCAACTACCTCCAGAACTAAGACAATCCGTGCGAAAATATGATCAATATAAATGGCTTGCTACACGAGGAGTAGATGAAGAGGCTCTTCTCAAAGGACTTCCTTTAGATCTTAGGAGAGACATCAAGCGCCATCTTTGTCTTGAACTAGTTAGAAGAGTGCCATTGTTTGACCAAATGGATGAGAGGATGCTAGATGCAATATGTGAGAGGCTAAAGCCTTCACTATGCACGGAGAGCACATATTTAGTTCGTGAGGGTGATCCTGTGAATGAGATGCTCTTCATAATCAGAGGACATCTTGATTCTTACACTACAAATGGAGGCCGCAGTGGTTTCTTCAACTCATGCCGTATTGGGCCTGGTGATTTCTGTGGTGAGGAGTTATTGACATGGGCCTTGGATCCAAGACCAAGTGTCATACTCCCTTCTTCAACTCGAACAGTTAAGGCCATCTCAGAAGTAGAGGCTTTTGCCCTCATAGCTGAAGATCTAAAGTTTGTTGCATCTCAGTTTAGAAGATTGCACAGCAAGCAACTAAGGCACAAGTTCAGGTTTTATTCACATCAATGGAGAACGTGGGCTGCTTGTTTCATACAATCTGCATGGAGACGGTATAGGAAAAGAAAGGAAGCTGCTGAACTGAGAGCCAGGGAGAATGTTCAATTTTCCTCAGTTGGTGAGCCTGAAACGGCAGCGTATAGACCAGGCTTGCTTGTTGTGTATGCAACAAGGAAGGGTGTTAATGTGCATTCAGGTGGGACAAATGTGAACTCTTTGCAGAAGCCAGTAGAACCTGGTGGGACAAATGTGAACTCTTTGCAGAAGCCAGCAGAACCTGATTTTTTTGTTGATGAGTAA 2130 0.4183 MASGNSRFVSFQDDTELVKLPTTNDDNGNKLNGAQVIEPSAKKAQKKEIKKTGKFLKARVLSRVFSEDYERVRRRILDPRGQVIHRWNKIFLVACLVSLFVDPLFFYLPLVRDEVCIDIGIALEVILIMIRSMADVFYIIQILMKFRTAYVAPSSRVFGRGELVIDPSKIATRYLSKGFWLDFIAALPLPQVLIWIVIPNLGGSTMTNTKNVLRFIIIFQYLPRLFLIFPLSSQIVKATGVVTETAWAGAAYNLMLYMLASHFLGASWYLLSIERQEACWRSVCELEKASCQYGFFACNRVKDSHRVSWFMTSNVTNLCSPNANFYQFGIYGDAVTSRVTTSAFFNKYFFCLWWGLRNLSSLGQGLLTSTYVGEIMFAIIVATLGLVLFALLIGNMQTYLQSTTVRLEEWRVKRTDTEQWMRHRQLPPELRQSVRKYDQYKWLATRGVDEEALLKGLPLDLRRDIKRHLCLELVRRVPLFDQMDERMLDAICERLKPSLCTESTYLVREGDPVNEMLFIIRGHLDSYTTNGGRSGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKAISEVEAFALIAEDLKFVASQFRRLHSKQLRHKFRFYSHQWRTWAACFIQSAWRRYRKRKEAAELRARENVQFSSVGEPETAAYRPGLLVVYATRKGVNVHSGGTNVNSLQKPVEPGGTNVNSLQKPAEPDFFVDE. 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03908 709 FunFam Cyclic nucleotide-gated ion channel 1 406 470 - -
Seca3g03908 709 SUPERFAMILY Voltage-gated potassium channels 78 401 - -
Seca3g03908 709 Pfam Ion transport protein 87 406 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Seca3g03908 709 CDD CAP_ED 479 610 IPR000595 -
Seca3g03908 709 Gene3D Helix hairpin bin 406 470 - -
Seca3g03908 709 MobiDBLite consensus disorder prediction 675 709 - -
Seca3g03908 709 PRINTS EAG/ELK/ERG potassium channel family signature 142 151 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca3g03908 709 PRINTS EAG/ELK/ERG potassium channel family signature 442 449 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca3g03908 709 PRINTS EAG/ELK/ERG potassium channel family signature 374 385 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca3g03908 709 PRINTS EAG/ELK/ERG potassium channel family signature 259 269 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca3g03908 709 PRINTS EAG/ELK/ERG potassium channel family signature 348 365 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca3g03908 709 PRINTS EAG/ELK/ERG potassium channel family signature 392 401 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca3g03908 709 MobiDBLite consensus disorder prediction 675 699 - -
Seca3g03908 709 ProSiteProfiles cAMP/cGMP binding motif profile. 479 576 IPR000595 -
Seca3g03908 709 FunFam Cyclic nucleotide-gated ion channel 1 477 595 - -
Seca3g03908 709 SUPERFAMILY cAMP-binding domain-like 409 605 IPR018490 -
Seca3g03908 709 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 54 704 - -
Seca3g03908 709 Gene3D Jelly Rolls 477 597 IPR014710 -
Seca3g03908 709 SMART cnmp_10 479 610 IPR000595 -
Seca3g03908 709 Gene3D - 89 403 - -
Seca3g03908 709 ProSiteProfiles IQ motif profile. 615 643 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03908 Seca-Chr3 73339007 73349573 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03908 53 689 Ion Channels AT2G28260 77.551 0.0 1038
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03908 K05391 - gmx:100791992 1160.59