Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03901 ATGTCATCTATGAAGAATATGAAGGACTGTTGGTTCTTTGACAAGAATTTTAATGGTTTGTCGGATGAAATTCTTGATGATGTCATCGACTTTTTTGATTTCCCACTTGAAGATGTGGAAACTGATGTTGTGGAAGAAGATTGGGATGCTCAATTTAAACACCTTGAAGAGCCATCTTTTGGTGTTTTCTCAGTATCATCATCTGGGTTGTGTGGTAAAACTCATAATGAGAATCCAAAACTTGGGTGGAGTTTCTCTGCTTCTGAAGATTCTCAGATTGACAAAAGAAATATTGGTAATTCAAGTCTGAAAGATTGGCAAGGACTGGTACCAGAGACTGCTGGACCTACATATGGCAAATCTATTCCTATCCAAAATGTCTCTTTTAACCGAAAAGATATCCACCAATTCCAAACCTACAGCCCAGTTTCTGTTTTTGAAAGCAGTAGTTCTTCCTCAGTTGAGAACTCCAACTTTGAGTTACCTGTCATCCCAGCAAAGCGCCGCCGAGGCAAACGCCAGCGTCTCTCAAGCTTCAGCCTGCTATTCTCAATTCCTTTCATCTCTACTTCACCAACTTTCCAAAAATATCAAAGGACAGCTGCCTCTGATTCAGATATAGAAATACAATCTGCTGGGAAATTATTAAGCAGAGTCAAAAAAACACAGAGGAAAAAGGATATCTCCCTGCTCTCTGATAAATATAATATTGAGATGAAGAGATCCTCATCACAGGAATCAATTGCCCCAAGAAAATGCATGCATTGTGAGGTGACAAAGACACCACAATGGAGAGAGGGACCTATGGGTCCTAAGACCCTATGCAATGCTTGTGGGGTTAGATACAGGTCTGGCCGGCTCTTTCCTGAATACAGGCCTGCAGCTAGCCCCACTTTTGTAGCATCATTGCACTCAAACTCTCACAAGAAGGTCATAGAAATGAGGAACAGAGCCACCCAGGAGACTATTAGAGGTTCTTCTATGTTGTATTTATAA 996 0.4096 MSSMKNMKDCWFFDKNFNGLSDEILDDVIDFFDFPLEDVETDVVEEDWDAQFKHLEEPSFGVFSVSSSGLCGKTHNENPKLGWSFSASEDSQIDKRNIGNSSLKDWQGLVPETAGPTYGKSIPIQNVSFNRKDIHQFQTYSPVSVFESSSSSSVENSNFELPVIPAKRRRGKRQRLSSFSLLFSIPFISTSPTFQKYQRTAASDSDIEIQSAGKLLSRVKKTQRKKDISLLSDKYNIEMKRSSSQESIAPRKCMHCEVTKTPQWREGPMGPKTLCNACGVRYRSGRLFPEYRPAASPTFVASLHSNSHKKVIEMRNRATQETIRGSSMLYL. 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03901 331 ProSitePatterns GATA-type zinc finger domain. 253 278 IPR000679 GO:0006355|GO:0043565
Seca3g03901 331 Pfam GATA zinc finger 253 286 IPR000679 GO:0006355|GO:0043565
Seca3g03901 331 SMART GATA_3 247 297 IPR000679 GO:0006355|GO:0043565
Seca3g03901 331 FunFam GATA transcription factor 242 328 - -
Seca3g03901 331 Gene3D - 243 322 IPR013088 GO:0006355|GO:0008270
Seca3g03901 331 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 250 310 - -
Seca3g03901 331 CDD ZnF_GATA 252 299 IPR000679 GO:0006355|GO:0043565
Seca3g03901 331 PANTHER GATA TRANSCRIPTION FACTOR 42 319 - -
Seca3g03901 331 ProSiteProfiles GATA-type zinc finger domain profile. 247 283 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03901 Seca-Chr3 72917690 72921380 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03901 14 321 C2C2-Gata Transcription Factor Family AT1G08010 37.179 3.09e-54 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Seca3g03901 GATA 3.8e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03901 - - gmx:100813303 384.03