Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03899 ATGACAATGAAGGAAGGTGAGAAGAGCCTGGATCCGCAACTATGGCATGCGTGTGCAGGTGGCATGGTTCAAATGCCTCAAGTGAACTCCAAAGTCTTCTACTTTCCACAAGGGCACGCAGAGCACGCTCACACCAACGTTGATCTGAGGGTTCCAGCACTCATCCTTTGCAGGGTTGCTGCAGTGAAATTCATGGCAGACCCAGAAACCGATGAAGTCTTCGCCAAGATAAGGCTCGTTCCTCTGAGGAATTCAGAGCTTGGTTTTGATGAAGAAGGTGGTGATGTGTTGGAAAGTTCAGAAAAGCCTGCATCTTTTGCCAAGACTTTAACTCAATCCGATGCTAACAATGGTGGGGGTTTCTCTGTTCCAAGGTACTGTGCTGAAACCATCTTTCCGCGGCTTGATTACTCAGCCGAACCGCCGGTTCAGACGGTGGTGGCTAAGGATGTTCACGGCGAGCTTTGGAAGTTCAGGCATATATATAGAGGCACGCCACGTAGGCACTTGCTTACAACCGGGTGGAGCACTTTTGTGAACCAGAAGAAACTGGTTGCAGGGGATTCTGTGGTGTTTCTGAGGGCTGAGAATGGGGAACTATGTGTTGGGATTCGTAGAGCAAAGAAGGGAATTGGTGGTGGTTCTGAGGCCTCATCTGGGTGGACCTCAGCTTCAGGCTCGGGTTCAGGGAACTGTGGTATTGGATCTTATGGGGCATTCTCTTTTTTCTTGAGAGAGGAGAACAAGCCATTGAGGAATGGTTGTGTTGGTAGTTTGAGTGGGAGAACAAAGGTGAGGCCTGAAGCTGTTATGGAAGCTGTGACACTGGCTGCTAGTAACCAGCCATTTGAAGTTGTTTATTACCCAAGAGCCAGCACTCCTGAGTTTTGCATTAAGGCTTCAGCTGTGAGGGCTGCTATGAAGGTTCAATGGTGCTCTGGGATGAGATTCAAGATGCCCTTTGAAACTGAGGACTCTTCCAGAATTAGCTGGTTCATGGGAACCATTGCTTCTGTTCAGGTTGTTGATCCTATTCGCTGGCCCAATTCCCCCTGGAGGCTTCTTCAGGTTACATGGGATGAGCCAGATTTACTACAAAATGTGAAGCGTGTTAGCCCTTGGTTGGTTGAATTGGTATCAAACATACCAACCATGCATTTCACACCCTTCTCTCCACCAAGGAAGAAGCTGCGGTTTCCACAACACCCCGACTTCCCCCTTGACGTTCAAATTTCAACACCAACATTTTCAGGCAACCATCTTGGGCTCAATAGCCCCTTGTGTGGTTTATCTGATAATGCTCCTGCAGGCATACAGGGAGCCAGGCATGCTCAAATTGGAATATCTCTTTCAGATTTCCACCTTAACAACAAACTACAGTTGGGGTTACTTCCAACTAATATCCAGCAGCTTGATGTGCATGGTGGGATTTCAAATGGCAACATGACCAACCATGATAAGAGCAAAGAAAGCTTATCATGTTTGCTGACCATTGGAAAATCTAATAAGAGTTTGGAGAAATCTGATGATGTTAAGAAACACCACTTTTTGCTTTTTGGTCAACCAATACTCACTGAGCAACAAATTTCTAGAGATTTGTTGTCTCATAGTTGTACTGAAAAGAATTCACTACATGAGAACAAGGACAAAGTAAAATGCTTTCTTGATGACTCCCAATCTGCACTTTCACAGCAGTTTTCACCAGGTAAGGCCTCTACTGCTGAGTTTTCTTGGCAACTTGGGTTGGATGCTGGTCATTGCAAGGTTTTCTTGGAGTCAGAAGATGTAGGACGGACTCTAGACCTATCAAGTCTTGGTTCTTATGATGAGCTGTATAGGATACTGGCCAACATGTTTGGCATAGAAAGATCTGAGTTGTTGAACCATGTGTTCTACAGTGATGCAAAAGGTGCTCTAAAGGAAACTGGAGAAGAACCCTTCAGTGAATTTATGAAGACAGCAAAAAGATTGACAATTCTGACTGATTCAGGCAGCAAAAATAGTAGAAGGGCCTGGATTACACATGGATTGGATGCATCAAATAAAACAGGTCCTCTGAGCATATTTGCTTAA 2073 0.4544 MTMKEGEKSLDPQLWHACAGGMVQMPQVNSKVFYFPQGHAEHAHTNVDLRVPALILCRVAAVKFMADPETDEVFAKIRLVPLRNSELGFDEEGGDVLESSEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVVAKDVHGELWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSVVFLRAENGELCVGIRRAKKGIGGGSEASSGWTSASGSGSGNCGIGSYGAFSFFLREENKPLRNGCVGSLSGRTKVRPEAVMEAVTLAASNQPFEVVYYPRASTPEFCIKASAVRAAMKVQWCSGMRFKMPFETEDSSRISWFMGTIASVQVVDPIRWPNSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNIPTMHFTPFSPPRKKLRFPQHPDFPLDVQISTPTFSGNHLGLNSPLCGLSDNAPAGIQGARHAQIGISLSDFHLNNKLQLGLLPTNIQQLDVHGGISNGNMTNHDKSKESLSCLLTIGKSNKSLEKSDDVKKHHFLLFGQPILTEQQISRDLLSHSCTEKNSLHENKDKVKCFLDDSQSALSQQFSPGKASTAEFSWQLGLDAGHCKVFLESEDVGRTLDLSSLGSYDELYRILANMFGIERSELLNHVFYSDAKGALKETGEEPFSEFMKTAKRLTILTDSGSKNSRRAWITHGLDASNKTGPLSIFA. 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03899 690 CDD B3_DNA 105 206 IPR003340 GO:0003677
Seca3g03899 690 FunFam Auxin response factor 104 208 - -
Seca3g03899 690 Gene3D - 583 668 - -
Seca3g03899 690 ProSiteProfiles PB1 domain profile. 584 664 IPR000270 GO:0005515
Seca3g03899 690 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 8 663 IPR044835 GO:0003677|GO:0006355|GO:0009725
Seca3g03899 690 FunFam Auxin response factor 311 384 - -
Seca3g03899 690 Gene3D - 104 208 IPR015300 -
Seca3g03899 690 Gene3D - 310 384 - -
Seca3g03899 690 SMART B3_2 106 208 IPR003340 GO:0003677
Seca3g03899 690 SUPERFAMILY DNA-binding pseudobarrel domain 99 207 IPR015300 -
Seca3g03899 690 Pfam Auxin response factor 273 356 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Seca3g03899 690 ProSiteProfiles B3 DNA-binding domain profile. 106 208 IPR003340 GO:0003677
Seca3g03899 690 Pfam B3 DNA binding domain 106 207 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03899 Seca-Chr3 72892596 72896386 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03899 3 667 B3 DNA Binding Superfamily AT4G30080 58.841 0.0 749
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Seca3g03899 B3 5.5e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03899 - - gmx:100814686 1132.86