Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03893 ATGGCTATGGCTGTGGCTCAACACAGAGAAAGTAGTAGCAGTGGCAGCATTGAGAAGCACCTTGACTCTGGGAAATATGTGAGGTACACTGCTGAACAAGTTGAGGCTCTAGAACGGGTTTATGCTGAGTGCCCCAAGCCTAGTTCCCTACGAAGACAGCAATTGATCCGAGAATGCCCCATCCTTTCCAACATCGAGCCAAAGCAAATCAAGGTTTGGTTTCAGAATCGCAGGGTTGGTTTGGCCTTTTGGATGTTTTGCAGGTGTAGAGAGAAGCAGAGGAAAGAGGCTTCACGGCTTCAGACTGTGAACCGGAAACTCACAGCAATGAATAAGTTGTTGATGGAGGAAAATGATCGGTTGCAAAAACAGGTTTCACAGCTTGTGTGTGAGAATGGGTATATGCGGCAGCAATTGCATAGTGTAAGTACATCAGCAGCAACTACTGATGCTAGTTGTGATTCGGTGGTTACTACTCCTCAGCATTCCATGAGAGATGCTAATAATCCTGCTGGACTCCTATCAATTGCAGAGGAGACATTGACAGAGTTTCTTTCAAAGGCTACAGGAACTGCTGTCGATTGGGTCCAGATGCCTGGGATGAAGCCTGGTCCGGATTCGGTTGGGATCTTTGCCATTTCACAAAGTTGCAGTGGAGTGGCAGCTAGAGCCTGTGGTCTTGTTAGTTTAGAACCTACAAAGATTGCAGAGATCCTTAAAGATCGTTCATCTTGGTTTCGGGAGTGCCGGAGCCTAGAAGTTTTTACAATGTTTCCTGCCGGTAATGGAGGAACCATTGAACTTGTTTACACACAGACATATGCTCCAACAACACTGGCTCCTGCCCGGGATTTCTGGACTTTGAGATACACTACAAGTTTGGACAATGGCAGTCTTGTGGTTTGTGAGAGGTCCCTGTCTGGTTCTGGCTCGGGCCCTAATCCAACTGCTGCTGCTCAGTTTGTAAGGGCTGAAATGCTCCCCAGTGGTTACTTGATTCGACCCTGTGATGGTGGAGGGTCAATCATCCACATTGTAGACCACCTAAATCTTGAGGCATGGAGTGTGCCAGAAGTGCTGCGACCACTTTATGAATCATCAAAGGTGGTAGCTCAGAAAATGACAATTGCGGCACTTCGGTATATCAGGCAAATTGCTCAGGAAACAAGTGGTGAAGTGGTATATGGATTGGGTAGACAGCCTGCTGTCCTGCGAACTTTCAGCCAAAGATTGAGCAGAGGCTTTAATGATGCTGTGAATGGATTCAATGATGATGGGTGGTCTGTACTGAACTGTGATGGTGCTGAGGATGTAATTATTGCAGTTAATTCAACCAAAAATTTGAGTGGCACCGCTAATCCAGCAAGTTCCCTTACATTCCTTGGAGGAATTCTCTGTGCAAAAGCTTCTATGTTGCTCCAAAATGTCCCTCCTGCAGTTTTGGTGCGCTTTCTAAGGGAGCACCGCTCAGAGTGGGCTGATTTCAATGTTGATGCTTATTCTGCTGCATCACTGAAAGCTGGCACCTATGCTTATCCTGGGATGAGGCCTACAAGATTCACTGGCAGTCAAATAATCATGCCTCTTGGCCATACAATTGAACATGAAGAGATGCTTGAAGTTATTAGGCTTGAAGGCCACTCTCTTGCTCAAGAAGATGCTTTTGTTTCTAGGGACATTCATCTCTTACAGATATGTAGTGGAATTGATGAGAATGCTGTGGGGGCTTGTTCTGAACTCATATTTGCTCCAATTGATGAAATGTTCCCGGATGATGCTCCGTTGGTTCCTTCTGGTTTCCGCATCATCCCATTGGATTCAAAACCAGTTGAGTTTTGTTCCCGTGTTGGTGATAAAAAGGATGCAATGACTTCAAATCGGACCCTGGATTTGACATCTGGTCTTGAAGTGGGCCCAGCAACCACTCACGGTGCAGATGCATCATCAAGTCATAACACTCGATCAGTGTTGACTATTGCCTTCCAGTTCCCTTTTGACAGCAGTTTACAAGATAATGTCGTCGTCATGGCACGCCAGTATGTCCGTAGTGTGATTTCCTCTGTGCAGAGGGTTGCCATGGCTATATCCCCCTCTGGTGTAAACCCAGCTGTTGGAGCAAAACTATCTCCTGGTTCTCCAGAAGCAGTTACACTAGCTCACTGGATCTGCCAGAGCTATAGTTACTATTTGGGGACTGATTTACTGAGATCAGATTCTCTTGTTGGTGACATGATGCTGAAACATCTGTGGCAACATCAGGATGCCATTTTATGCTGTTCCTTGAAGACGCAGCCGGTGTTCATCTTTGCTAATCAAGCTGGCCTTGACATGTTGGAAACAACTCTAGTGGCTTTACAAGACATCACATTGGATAAAATATTTGATGAGTCTGGACGCAAGGCATTGTGTGCAGACTTTGCTAAGTTAATGCAACAGGGTTTTGCTTATCTGCCAGCTGGGATCTGCATGTCAACGATGGGGCGGCATGTTTCATATGAGCAAGCAATCGCATGGAAAGTGCTTACTGCAGAAGATAACACTGTGCATTGCTTAGCTTTCTCTTTCATAAATTGGTCATTTGTATGA 2586 0.4578 MAMAVAQHRESSSSGSIEKHLDSGKYVRYTAEQVEALERVYAECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRVGLAFWMFCRCREKQRKEASRLQTVNRKLTAMNKLLMEENDRLQKQVSQLVCENGYMRQQLHSVSTSAATTDASCDSVVTTPQHSMRDANNPAGLLSIAEETLTEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCSGVAARACGLVSLEPTKIAEILKDRSSWFRECRSLEVFTMFPAGNGGTIELVYTQTYAPTTLAPARDFWTLRYTTSLDNGSLVVCERSLSGSGSGPNPTAAAQFVRAEMLPSGYLIRPCDGGGSIIHIVDHLNLEAWSVPEVLRPLYESSKVVAQKMTIAALRYIRQIAQETSGEVVYGLGRQPAVLRTFSQRLSRGFNDAVNGFNDDGWSVLNCDGAEDVIIAVNSTKNLSGTANPASSLTFLGGILCAKASMLLQNVPPAVLVRFLREHRSEWADFNVDAYSAASLKAGTYAYPGMRPTRFTGSQIIMPLGHTIEHEEMLEVIRLEGHSLAQEDAFVSRDIHLLQICSGIDENAVGACSELIFAPIDEMFPDDAPLVPSGFRIIPLDSKPVEFCSRVGDKKDAMTSNRTLDLTSGLEVGPATTHGADASSSHNTRSVLTIAFQFPFDSSLQDNVVVMARQYVRSVISSVQRVAMAISPSGVNPAVGAKLSPGSPEAVTLAHWICQSYSYYLGTDLLRSDSLVGDMMLKHLWQHQDAILCCSLKTQPVFIFANQAGLDMLETTLVALQDITLDKIFDESGRKALCADFAKLMQQGFAYLPAGICMSTMGRHVSYEQAIAWKVLTAEDNTVHCLAFSFINWSFV. 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03893 861 Coils Coil 104 131 - -
Seca3g03893 861 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 21 861 IPR044830 GO:0003700
Seca3g03893 861 CDD START_ArGLABRA2_like 170 386 - -
Seca3g03893 861 ProSiteProfiles START domain profile. 166 394 IPR002913 GO:0008289
Seca3g03893 861 Gene3D - 210 392 IPR023393 -
Seca3g03893 861 ProSiteProfiles 'Homeobox' domain profile. 20 78 IPR001356 GO:0003677
Seca3g03893 861 SUPERFAMILY Homeodomain-like 23 79 IPR009057 -
Seca3g03893 861 FunFam Homeobox-leucine zipper protein REVOLUTA 25 80 - -
Seca3g03893 861 SMART START_1 175 385 IPR002913 GO:0008289
Seca3g03893 861 Pfam START domain 176 383 IPR002913 GO:0008289
Seca3g03893 861 Pfam MEKHLA domain 717 860 IPR013978 -
Seca3g03893 861 CDD bZIP 88 126 - -
Seca3g03893 861 Pfam Homeodomain 25 78 IPR001356 GO:0003677
Seca3g03893 861 SMART HOX_1 22 88 IPR001356 GO:0003677
Seca3g03893 861 Gene3D - 18 82 - -
Seca3g03893 861 SUPERFAMILY Bet v1-like 175 387 - -
Seca3g03893 861 CDD homeodomain 25 78 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03893 Seca-Chr3 72735290 72741768 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03893 1 861 Homeobox Transcription Factor Family AT5G60690 81.336 0.0 1450
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Seca3g03893 START 1.6e-47 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03893 K09338 - gmx:100804870 1592.79