Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03885 ATGGCTAAAGATATTGAGGTTCAAGAGCAAGGAGAATACTCAGCTAAAGACTACCAAGACCCACCTCCTGCACCCTTGTTCGATCCAGAGGAGCTCACACAGTGGTCCTTCTACAGAGCCATCATCGCTGAGTTCATAGCCACCCTTCTCTTCCTTTATGTCACCGTTTTAACCATCATTGGCTACAAACACCAAACTGATAAGACCATTGGTGGCACTGATTGTGATGGTGTTGGCATTTTGGGTATTGCTTGGGCCTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCTGGAGGACACATAAACCCTGCTGTGACATTTGGGTTGTTCTTGGGACGCAAGGTGTCTTTGATAAGGGCGTTTTTGTACATGGTAGCACAGTGTGCTGGTGCTATCTGTGGAACTGGACTAGCCAAGGGCTTCCAAAAAGCATACTACAACAGGTATGGAGGTGGTGCTAACTCTGTGGCAGATGGTTACAGCAAAGGTACCGCTTTGGGTGCTGAGATTATTGGTACCTTTGTTCTTGTCTACACTGTTTTCTCTGCCACTGATCCTAAGAGAAACGCTAGGGACTCTCATGTTCCTGTGTTGGCACCACTCCCAATTGGATTTGCTGTGTTCATGGTTCACTTGGCTACAATCCCAGTTACTGGTACTGGCATTAACCCAGCAAGAAGTTTCGGAGCAGCTGTCATTTACAATGAAGACAAAATCTGGGATGACCAGGTAAACATTTATATATCCATATCCATAAATTAA 777 0.4569 MAKDIEVQEQGEYSAKDYQDPPPAPLFDPEELTQWSFYRAIIAEFIATLLFLYVTVLTIIGYKHQTDKTIGGTDCDGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRAFLYMVAQCAGAICGTGLAKGFQKAYYNRYGGGANSVADGYSKGTALGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSFGAAVIYNEDKIWDDQVNIYISISIN. 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03885 258 CDD MIP 39 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca3g03885 258 Gene3D Glycerol uptake facilitator protein. 24 257 IPR023271 -
Seca3g03885 258 SUPERFAMILY Aquaporin-like 30 243 IPR023271 -
Seca3g03885 258 ProSitePatterns MIP family signature. 105 113 IPR022357 -
Seca3g03885 258 PRINTS Major intrinsic protein family signature 87 111 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca3g03885 258 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca3g03885 258 PRINTS Major intrinsic protein family signature 209 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca3g03885 258 PRINTS Major intrinsic protein family signature 173 191 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca3g03885 258 PRINTS Major intrinsic protein family signature 124 143 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca3g03885 258 FunFam Probable aquaporin PIP1-2 24 258 - -
Seca3g03885 258 MobiDBLite consensus disorder prediction 1 23 - -
Seca3g03885 258 Pfam Major intrinsic protein 31 246 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca3g03885 258 NCBIfam MIP family channel protein 43 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca3g03885 258 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 8 251 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03885 Seca-Chr3 72559700 72561478 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03885 1 248 Major Intrinsic Protein MIP AT5G60660 80.645 4.74e-152 424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03885 K09872 - gmx:100811119 487.648