Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03871 ATGAGTTCTGAGGAAAAACCTCCTGTGAGTGAGGAACATGATGATGCAGCTGCTTCTTGCAGACGAACAGTTTCTCTTCCTGTGTCCAAGGTTGATGATCCAATGGGGATAACTGAAGAAACCACACATGTTCCTCCTCGGAAGCGACAGAATCTGATCCTAGAAATACCCTCAAGAAAACCAGAAGAGTGTTCCCAAGATTTTGTTGCAATCAAAATGCCACCCACACCTAGTCCCACTCCCACTCCCAAGAGAGTGAATTTTCTTGTGACTTCTCGCTCTGTTGATGCTCCAATACATAATTCTCCTGGGCCTTCATCATCCAAAGGCAAATCATCCAGAAGAAGCCTCCTACCAAAATTGAGCTTCAGGTATCGAACACCACCAGATATTGAAAAGCCAACTCAAGAAGTTTCCTCCTCAGGCATTCGAGAAAAGCCTTCCATCTCAAGATCACTGTCCCTTTCTAAGATATTTACTCCTAGGATTAAGAGAACATCATCATTACCAGTGGAAGAAATTGGACATTCAAATCCAGAATCTACTCATGGTGGAAGTGTTGGTGGTCCTCTACATAAGAGAGATACTCAACGAAAGATAGCTCGCTCTCTTTCAGTGCCTGCTAACAACAAAGATAAAAGCATAAGGAGGATGGATTCATTTTTCCGCGTTGTTCCTTCTACTCCTTGTGTAAAGGAAGGAATTGAATTGCTGGCCACGTCCCCAGCAAAGGATACTGAAAATGAAGATGCTGATGGTGAAGATATAGCTGAAGAAGAGGCTGTGTGTAGAATCTGTCTGGTTGAATTATGTGAAGGAGGTGAGACTTTCAAGCTGGAATGCAGCTGCAGAGGTGAACTTGCTCTGGCTCACCAAGAATGTGCTATTAAATGGTTTAGTATAAAGGGTAACAAGACCTGTGATGTGTGTAAGGAGGAAGTCCGAAACCTACCTGTCACTCTATTACGGATCCAAAGTGTTCGAAATCGGAATACTGGAGCAAGTAGATCTCAGCTGGAAGATGAAGTCCCAGTGCTTGTCATTGTCAGCATGCTTGCCTATTTCTGTTTTCTTGAGCAACTATTGGTTGCAAAAATGGGAACTGGTGCAATTGCTATATCCCTTCCATTTTCCTGTGTACTGGGTCTGCTCTCCTCCATGACAGCATCAACCATGGTGAAGAGCAGGTTCATCTGGATTTATGCATCTGTCCAGTTTGCTCTGGTGGTTCTCTTCGCGCATATATTTTACTCCTTGGTTCATGTGCAAGCAGTTCTGTCAATCCTTCTTGCAACATTTTCTGGTTTTGGTGTGGTGATGGGTGGGAGTTCTATTCTTGTGGAGTTTTTCAGATGGAGAAGGAGATGGCTGGCTTTAGCAGAGCAGCAACATGGCCCTCAACTGATGACACAAGCAGGACAATACCCTCAAACTGTAAACACACCACGTTCTTCAGTCCCTCCTAACCACAGCCAAGCCATGGTTCAAAATCAACAGAACTCAAATCAGAACTGA 1515 0.4409 MSSEEKPPVSEEHDDAAASCRRTVSLPVSKVDDPMGITEETTHVPPRKRQNLILEIPSRKPEECSQDFVAIKMPPTPSPTPTPKRVNFLVTSRSVDAPIHNSPGPSSSKGKSSRRSLLPKLSFRYRTPPDIEKPTQEVSSSGIREKPSISRSLSLSKIFTPRIKRTSSLPVEEIGHSNPESTHGGSVGGPLHKRDTQRKIARSLSVPANNKDKSIRRMDSFFRVVPSTPCVKEGIELLATSPAKDTENEDADGEDIAEEEAVCRICLVELCEGGETFKLECSCRGELALAHQECAIKWFSIKGNKTCDVCKEEVRNLPVTLLRIQSVRNRNTGASRSQLEDEVPVLVIVSMLAYFCFLEQLLVAKMGTGAIAISLPFSCVLGLLSSMTASTMVKSRFIWIYASVQFALVVLFAHIFYSLVHVQAVLSILLATFSGFGVVMGGSSILVEFFRWRRRWLALAEQQHGPQLMTQAGQYPQTVNTPRSSVPPNHSQAMVQNQQNSNQN. 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03871 504 CDD RING_CH-C4HC3_MARCH 263 311 - -
Seca3g03871 504 MobiDBLite consensus disorder prediction 171 195 - -
Seca3g03871 504 PANTHER OS02G0165000 PROTEIN 23 469 - -
Seca3g03871 504 MobiDBLite consensus disorder prediction 1 59 - -
Seca3g03871 504 SMART ringv_2 262 311 IPR011016 GO:0008270
Seca3g03871 504 MobiDBLite consensus disorder prediction 91 115 - -
Seca3g03871 504 MobiDBLite consensus disorder prediction 91 147 - -
Seca3g03871 504 MobiDBLite consensus disorder prediction 133 147 - -
Seca3g03871 504 MobiDBLite consensus disorder prediction 1 19 - -
Seca3g03871 504 MobiDBLite consensus disorder prediction 477 504 - -
Seca3g03871 504 Pfam RING-variant domain 263 310 IPR011016 GO:0008270
Seca3g03871 504 SUPERFAMILY RING/U-box 259 314 - -
Seca3g03871 504 ProSiteProfiles Zinc finger RING-CH-type profile. 255 317 IPR011016 GO:0008270
Seca3g03871 504 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 248 318 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03871 Seca-Chr3 72467659 72472911 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03871 260 317 C3H Transcription Factor Family AT2G37950 47.458 1.16e-12 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03871 - - gmx:100788108 762.296