Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03870 ATGGCCGAGCCTCTCCTCAACACTGAACTCTCTTCCTCTAAAACCCTAGACCCAATCGACACTCACGATTCCACTTTCGAACCGCATCAAACGCCTCCGCAAGACGCTCAAATCTATGAAGTAAACGACGACGTCGTTCGGACTGAGAAACGGAAGAGGGACGATGACGGTGGCGACGGCGACGGCAACGATGCCAACCGTTCGCTCCATCCATTGTGGAAGACCAGCCTCTGTTCCTACTTCAGGCGCCAAGATGGCTCCTGTAGCCACGGCGACGCGTGCCGCTACGCGCACGGCGAGGCAGAGCTCCGTCCTCGACCCGACAACACGTGGGACCCGACCTCCGAGCGAGCGAAGAAGGCGTTGATAACCGAGACGGGAGAGGAACGCAGCGTTTCAGAGGGTGTGATGATGACTGAAGCCGTTGTCGACGATGACGATGACGGCGGTGATGACGGTTGCGCCGCCTCCAATCACGCGCTCAGTAAATGCTTGGTGCATTTGCCGAGGAAATGGAGCTCCGAGAACTTGAGGAATTTCCTCAACGAGGAGGGTATACCTTTTAAGCATGCGAAGAAAAAAAAAGGTATGATGGTTGGTTTCGTTACTTTTGAAGATGAAGAACAAATGAAGAGTTCATCAAAGGATTTAGAAGGAAAATCAATTGGCAACAAAAGGTTAAAGGTTGCTGATGTCATTCCTCGACCATTGGAGAAGAAATGTAACTCCGAAGTTAGTGCATTAGATAAGGAGAATTCAGGGGGAGATGTTCCTTCAAATGATGATAATGTGGCAGTTGATGGTTCCGTGTCAAAGACAAGAAGCTTGCGTGATGTAGTGACTCCTCTAGCACATATGGCCTATGCTGATCAGTTGGAACAGAAAAAAAGCTCTCTCATGCAGATTCTCAAAAGACTTACTAGAAATGCTCGTAAAGCATGTCCAACTGGTGTTCCTCTTCCCGAGTGGATTCTCAAGTCTAGGGAAATAGGTAATAGTACAATAAGAATTTTAATGACTCATACAGTTCTTTTGCAACTTCTTTCTCACACTTCTGCAGGTGGTCTTCCATGCAAATTAGAGGGTATTATTGCATCACCAATTGTTAATGGATATCGTAATAAGTGTGAATTTTCAGTTGGATATTCTCTGGAAGGCAAAGTAACAGTGGGATTCATGCTTGGAAACTTCAGGGAGGGTGTAACAGCAGTTGAGGAAGCCGTGAACTGCCCAAATGTTTCTCCCATTGCTTGCAAATATGCTACTATCTTTCAGGAATTTCTACAGCATTCTGATTTACCAGTTTGGAACAGATTCAAAAATACTGGATTTTGGCGTCAATTGACGGTTCGAGAAGGGAGGACAAATGGGAATGTTATTGATGCTGATACTTTTGGTGGTATTGCAGAGACCATGCTTATTGTGCAGGTTTCTTCTGCAAGCTTTGATGATGCACAAGTGGCGGCTGAATTTAAGAGGCTTGCTCAGGCATTTATTGCTGGAGCTACTTCACATTGTCCATCATTGCCCCTTTCAGCTCTGGTTGTTCAGGATCACCAAGGAATATCCAATGTAGCGCCATCTGATGCACCACTGCATTACCTTCCCATTCCTAAAGCAGTTGGTGATCCTGAGATGGATAAAAGCAATAATGCCATGGATGTAAGAATTCATGATTATATCAGCAATCTCCGGTTCTCTATTTCTCCAACTGCATTTTTTCAGGTTAACACTCTTGCTGCCGAGAAGTTATACTCACTTGCTGGAGATTGGGCATGCTTAGGTCCTGACACATTGCTATTTGATATATGCTGTGGGACAGGAACGATTGGTCTGACCTTAGCACATCGAGTTGGTATGGTGATTGGAATTGAAATGAATGCTTCTGCTGTATCTGATGCTCATAGGAATGCTGAGATTAATGGCATAAAAAACTGTAGATTTATATGTTCAAAGGCAGAGGATGTAATGGGATCTCTGTTAAGGGAATACCTAAATGTGCCGAAGGAACAAGTTGATGATCCTAATATCTCTGAAAGTGGCTATGACATTTCCGAGGATAGTGCCTGCCCAAAGCCTGAAAATGGTGAAATGACATCTCATTGTCCAGAAAATAACAATGCAGAAGTTGGAGGTGATGCTCAGAAGGGTAGCTCTTCTGAAAATGGGAATACTTCAAAGCAACAGTTTAAAAATGTTGTTGCTATTGTTGATCCTCCTCGTGCTGGGCTTCATCCAACTGTGATCAAAGCTTTAAGAACTCATCCACGTCTAAGGAGGCTTGTATATATATCATGTAATCCTGAAACTTTGGTGGCAAATGCTATTGAGCTTTGTACTCCATCCCCAATAACAATGGAGAAAGGAAATAAAGACAACAGAGGATGGAGAAACATGAGCAGTGCTGGTCTAGCACGGCACAGGGCCAAGTCTATGCCCATCTCAGAGGCCTTCCAACCCATAAAAGCTATGGCTGTTGATCTTTTTCCACACACTCAACACTGTGAATTGGTTATGCTTCTTGAGAGGTAG 2532 0.4471 MAEPLLNTELSSSKTLDPIDTHDSTFEPHQTPPQDAQIYEVNDDVVRTEKRKRDDDGGDGDGNDANRSLHPLWKTSLCSYFRRQDGSCSHGDACRYAHGEAELRPRPDNTWDPTSERAKKALITETGEERSVSEGVMMTEAVVDDDDDGGDDGCAASNHALSKCLVHLPRKWSSENLRNFLNEEGIPFKHAKKKKGMMVGFVTFEDEEQMKSSSKDLEGKSIGNKRLKVADVIPRPLEKKCNSEVSALDKENSGGDVPSNDDNVAVDGSVSKTRSLRDVVTPLAHMAYADQLEQKKSSLMQILKRLTRNARKACPTGVPLPEWILKSREIGNSTIRILMTHTVLLQLLSHTSAGGLPCKLEGIIASPIVNGYRNKCEFSVGYSLEGKVTVGFMLGNFREGVTAVEEAVNCPNVSPIACKYATIFQEFLQHSDLPVWNRFKNTGFWRQLTVREGRTNGNVIDADTFGGIAETMLIVQVSSASFDDAQVAAEFKRLAQAFIAGATSHCPSLPLSALVVQDHQGISNVAPSDAPLHYLPIPKAVGDPEMDKSNNAMDVRIHDYISNLRFSISPTAFFQVNTLAAEKLYSLAGDWACLGPDTLLFDICCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFICSKAEDVMGSLLREYLNVPKEQVDDPNISESGYDISEDSACPKPENGEMTSHCPENNNAEVGGDAQKGSSSENGNTSKQQFKNVVAIVDPPRAGLHPTVIKALRTHPRLRRLVYISCNPETLVANAIELCTPSPITMEKGNKDNRGWRNMSSAGLARHRAKSMPISEAFQPIKAMAVDLFPHTQHCELVMLLER. 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03870 843 MobiDBLite consensus disorder prediction 1 37 - -
Seca3g03870 843 CDD AdoMet_MTases 602 656 - -
Seca3g03870 843 ProSiteProfiles SAM-dependent methyltransferase RNA m(5)U-type domain profile. 279 843 IPR010280 GO:0006396|GO:0008173
Seca3g03870 843 MobiDBLite consensus disorder prediction 246 267 - -
Seca3g03870 843 MobiDBLite consensus disorder prediction 672 727 - -
Seca3g03870 843 Gene3D - 164 240 IPR012677 -
Seca3g03870 843 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 73 100 IPR000571 GO:0046872
Seca3g03870 843 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 281 843 IPR029063 -
Seca3g03870 843 SUPERFAMILY RNA-binding domain, RBD 167 235 IPR035979 GO:0003676
Seca3g03870 843 Gene3D - 66 106 - -
Seca3g03870 843 MobiDBLite consensus disorder prediction 42 63 - -
Seca3g03870 843 Pfam tRNA (Uracil-5-)-methyltransferase 730 779 IPR010280 GO:0006396|GO:0008173
Seca3g03870 843 ProSitePatterns RNA methyltransferase trmA family signature 1. 738 770 IPR030390 -
Seca3g03870 843 SMART c3hfinal6 72 100 IPR000571 GO:0046872
Seca3g03870 843 ProSiteProfiles Zinc finger C3H1-type profile. 72 101 IPR000571 GO:0046872
Seca3g03870 843 MobiDBLite consensus disorder prediction 1 68 - -
Seca3g03870 843 Pfam Methyltransferase domain 600 658 IPR025714 -
Seca3g03870 843 Gene3D Vaccinia Virus protein VP39 541 842 IPR029063 -
Seca3g03870 843 Coils Coil 289 309 - -
Seca3g03870 843 MobiDBLite consensus disorder prediction 699 727 - -
Seca3g03870 843 PANTHER TRNA (URACIL-5-)-METHYLTRANSFERASE 90 843 IPR045850 -
Seca3g03870 843 SUPERFAMILY CCCH zinc finger 70 105 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03870 Seca-Chr3 72451965 72457844 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca3g03870 tRNA_U5-meth_tr 2.3e-08 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03870 K15332 - gmx:100777601 1101.66