Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03867 ATGCCCTACCCCCTCCCCTGCAGGTGCAACAACTTCCCCCCTAACCCACCATGGAAGATGGACGATGACAGTGGCGATGGCGATGGCGAAGGCGACGGAGACGACAACGATGCCGACCGTTCGCTCCATCCATTGTGGAAGATCAGCCTCTGTTCCTACTTCAGGCGCCAAGACAGCTCATGTAGCCACGGCGACGCGTGCCGCTACACGCACGGCGAGGCAGAGTTCCATCCTCGACCTGACAACACATGGGACCCGACCTCCGAGCGAGCGAAGAAGGCGTTGAAAACCCAGACGGGAGAGGAACGCAACATTTCAGAGGGTGTGATGATGACCCTATTTTTATGTGATCATGCATCATGGAGACGACCGAAGGTTGTTTCCGTTGTTGGTCACTAA 399 0.5664 MPYPLPCRCNNFPPNPPWKMDDDSGDGDGEGDGDDNDADRSLHPLWKISLCSYFRRQDSSCSHGDACRYTHGEAEFHPRPDNTWDPTSERAKKALKTQTGEERNISEGVMMTLFLCDHASWRRPKVVSVVGH. 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03867 132 ProSiteProfiles Zinc finger C3H1-type profile. 45 74 IPR000571 GO:0046872
Seca3g03867 132 SUPERFAMILY CCCH zinc finger 43 77 IPR036855 GO:0046872
Seca3g03867 132 Gene3D - 39 79 - -
Seca3g03867 132 MobiDBLite consensus disorder prediction 10 41 - -
Seca3g03867 132 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 46 73 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03867 Seca-Chr3 72399263 72399661 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca3g03867 zf-CCCH 6.5e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03867 K15332 - gmx:100777601 132.109