Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03854 ATGTTCAGTAAGACCCTTTCTTTTGCCAAAGCCATGGGATGCTGTAATTGCTTTGGGTTCATTGGTAGATGGAACCGTCAAAGCGCTATGCCTGACATCAACCATAATCTCTCCCAGGAGCTGTTGCTGGATGATGACATTGAAGATGAAGAGCACTTGTATAATGAAGAAGTTATTAACACCACTAGTGGAGATGAGAGTGAGGTGCAAACTCGTCCCAAGCGATCGGAGGAAATTTTGAACTTGAGAGTAGAGAAAGGCATGATTTGTAGGCAGTTTCCTGTTAAGGAGACTAATAAAGTTGTTCGCACAGAGGATGAAAATGGGAACAAGATGATAAATGAGTATATTCGTGAGTATAAGATTGGTTCCGGTAGTTATGGGAAAGTGGCTCTTTATCGAAGCTCTGTTGATGGAAAGCATTATGCTATTAAGGCCTTTCACAAGTCCCATTTATTGAAGCTTCGAGTTGCACCCTCAGAAACTGCCATGAGTGATGTTCTACGAGAGGTATATTGCTTCTGTATATTTTTTTTTTCAGTTTTCATTATGAAAATGCTGGAACATCCTAATATTGTCAATCTCATTGAGGTGATTGATGACCCAGAGTCGGATAACTTCTACATGGTACTTGAATATGTGGAAGGCAAGTGGGTTTGTGAGGGCTCAGGTCCCACTTGTGGTTTAGGTGAAGAGACTGCCAGGAGATACTTGCGTGATATTGTTTGTGGATTAACATATCTCCATGCTCATAATATAGTACATGGGGATATTAAACCTGATAATCTGTTGATTACTCGTCATGGTACAGTAAAGATAGGGGATTTCAGTGTCAGCCAGGCTTTTGAGGATAATAATGATGTGCTTCGACGATCACCTGGCACTCCTGTTTTCACTGCACCAGAATGTATTTTAGGTGTTACCTATCATGGCAAAGCTGCAGACACGTGGGCAGTAGGAGTTACTTTATACTGTATGATATTTGGTGAATACCCTTTTCTTGGTGACACACTTCAAGATACATATGACAAAATAGTGAATAATCCTTTAGTGCTCCCAAATGATATGAATCCGCGGTTGAAGAACTTAATAGAAGGCCTACTTTTCAAAGACCCGAGATTAAGGATGACATTGGGTGATGTTGCGGGGGATAGCTGGGTTATTGGAGATGATGGGCCAATTCCTGAGTACCTTTGTTGGTGCAAAAGGAAGAGCTTGGAGAGTGAAGACAATAATGAGAAGAGCAATATGCTTTCTTGA 1260 0.4103 MFSKTLSFAKAMGCCNCFGFIGRWNRQSAMPDINHNLSQELLLDDDIEDEEHLYNEEVINTTSGDESEVQTRPKRSEEILNLRVEKGMICRQFPVKETNKVVRTEDENGNKMINEYIREYKIGSGSYGKVALYRSSVDGKHYAIKAFHKSHLLKLRVAPSETAMSDVLREVYCFCIFFFSVFIMKMLEHPNIVNLIEVIDDPESDNFYMVLEYVEGKWVCEGSGPTCGLGEETARRYLRDIVCGLTYLHAHNIVHGDIKPDNLLITRHGTVKIGDFSVSQAFEDNNDVLRRSPGTPVFTAPECILGVTYHGKAADTWAVGVTLYCMIFGEYPFLGDTLQDTYDKIVNNPLVLPNDMNPRLKNLIEGLLFKDPRLRMTLGDVAGDSWVIGDDGPIPEYLCWCKRKSLESEDNNEKSNMLS. 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03854 419 Gene3D Phosphorylase Kinase; domain 1 110 222 - -
Seca3g03854 419 SUPERFAMILY Protein kinase-like (PK-like) 112 399 IPR011009 -
Seca3g03854 419 ProSiteProfiles Protein kinase domain profile. 116 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g03854 419 Gene3D Transferase(Phosphotransferase) domain 1 225 393 - -
Seca3g03854 419 ProSitePatterns Serine/Threonine protein kinases active-site signature. 253 265 IPR008271 GO:0004672|GO:0006468
Seca3g03854 419 ProSitePatterns Protein kinases ATP-binding region signature. 122 145 IPR017441 GO:0005524
Seca3g03854 419 SMART serkin_6 116 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g03854 419 FunFam Serine/threonine-protein kinase GRIK2 106 419 - -
Seca3g03854 419 FunFam Serine/threonine-protein kinase Ssp1 110 222 - -
Seca3g03854 419 PANTHER MAP/MICROTUBULE AFFINITY-REGULATING KINASE 61 390 - -
Seca3g03854 419 CDD STKc_LKB1_CaMKK 122 387 - -
Seca3g03854 419 Pfam Protein kinase domain 118 386 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03854 Seca-Chr3 72216923 72222195 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03854 122 386 CBL-interacting serine-threonine protein kinases AT5G35410 32.830 9.36e-41 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-LKB Seca3g03854 Pkinase 2.8e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03854 K00908 - gmx:100789178 683.715