Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03849 ATGGCTTCCTCCATCAATTCCAATTCAGAAAACAAGAAAATTAAAAATGGCGAAACCTCCAAAGCTGCAACTAAAGCCAAAAAGGATAGAGAAGAGAAAAAGAAGGTGAAGGTGAAGGTGAAGGTGAAGAAGGAGAAGGAGGAGAACAAAAAGAAGAAGAATAAGAAGCTCAAGCTCAACAATGGCAATTCCAAACAACATGAAAAAGAAGAAGCTAATGGAAAGCCACAGGAGCACGACAAGGAAGAGGTAGGCGAAGTCGAAGGTGGAGAAGCGGCGAAAACGCACGTGTTTCCGATGAATCGTATCAGGACAGTGCTAAAGGGCGAAGATCCTAATTTACGTGTTTCTCAGGAAGCTTTATTGGCCATCAACAAAGCTACGGAGAAGTTCCTTGAACAATTCACGCAGGACGCTTATGCTTGTTCTGTTCAGGACCGTAAGAAATCTCTGAGTTACAAGCACCTATCAAATGTTGTTAGTAAGCAGAGAAGATATGACTTTCTTTCTGATTATGTTCCTGAGAAAGTGAAAGCTGAGGATGCATTAAGAGAGAGAAATTCAAAAGTCAATGGAGGAGGTTTGAAAATGTAA 594 0.4108 MASSINSNSENKKIKNGETSKAATKAKKDREEKKKVKVKVKVKKEKEENKKKKNKKLKLNNGNSKQHEKEEANGKPQEHDKEEVGEVEGGEAAKTHVFPMNRIRTVLKGEDPNLRVSQEALLAINKATEKFLEQFTQDAYACSVQDRKKSLSYKHLSNVVSKQRRYDFLSDYVPEKVKAEDALRERNSKVNGGGLKM. 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03849 197 MobiDBLite consensus disorder prediction 14 47 - -
Seca3g03849 197 Coils Coil 28 62 - -
Seca3g03849 197 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 98 160 IPR003958 -
Seca3g03849 197 Gene3D Histone, subunit A 15 175 IPR009072 GO:0046982
Seca3g03849 197 MobiDBLite consensus disorder prediction 1 96 - -
Seca3g03849 197 SUPERFAMILY Histone-fold 109 176 IPR009072 GO:0046982
Seca3g03849 197 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 53 189 - -
Seca3g03849 197 MobiDBLite consensus disorder prediction 61 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03849 Seca-Chr3 72125801 72130070 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03849 89 157 CCAAT-HAP5 Transcription Factor Family AT1G07980 46.377 2.03e-17 74.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Seca3g03849 CBFD_NFYB_HMF 1.1e-12 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03849 - K03506 lja:Lj3g3v3086110.3 177.948