Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03844 ATGGGTGGTGTACCGGTATATATAAAGCTTCTTCAGACAACACCAAAAGCTGATATTGTGGTGGCTCAAGATGGCACTGGGAATTATAAGACCATATCAGAAGGTGTGGCTGCAGCTGCAGCTGCTAAGCTTAGTGGAAAAGGGGGAGTTGTTATTCACGTCAAAGCAGGTGTTTATAAAGAGAGTGTTGACATTAAGAGGTCAATAAAGAACTCGATGATCATTGGAGATGGGATGGGTTCCACTATTGTTATTGGCAATAATAACGCACAAGATGGCTCCATTGCGTTTCGTTCAGACACTTTCGGGAATGAAGAAGAAATACTTGTTACGGGAATGAAGCTCCTGAGGAAGCCAATAATGGTGAACTAA 372 0.4247 MGGVPVYIKLLQTTPKADIVVAQDGTGNYKTISEGVAAAAAAKLSGKGGVVIHVKAGVYKESVDIKRSIKNSMIIGDGMGSTIVIGNNNAQDGSIAFRSDTFGNEEEILVTGMKLLRKPIMVN. 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03844 123 Gene3D - 12 114 IPR012334 -
Seca3g03844 123 SUPERFAMILY Pectin lyase-like 13 103 IPR011050 -
Seca3g03844 123 Pfam Pectinesterase 18 108 IPR000070 GO:0030599|GO:0042545
Seca3g03844 123 ProSitePatterns Pectinesterase signature 1. 46 65 IPR018040 -
Seca3g03844 123 PANTHER PECTINESTERASE 17 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03844 Seca-Chr3 72028859 72030028 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03844 12 103 Carbohydrate Esterase AT1G23200 59.140 2.45e-28 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03844 - - gmx:100816802 142.51