Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca3g03838 | ATGATGTCTGAAGAAGCCTTTTCTGCTTCTTCCAACACCATGAGAGTTCCCTTGGTTCAAGACCCAAACCCTAATCCTAACCCTAATCCAAATCAACCTAAGAAAAAGAGAAATCTACCAGGAACACCAGATCCAGATGCACAAGTGATAGCTCTGTCACCCAAGTCCCTGATGGCTACCAACCGTTTTGTATGTGAAATCTGCAACAAGGGTTTCCAGAGAGACCAGAATTTGCAGCTGCACCGACGGGGACACAACCTTCCATGGAAGCTGAAGCAAAGAACAAACAAAGATCAAGTGAGGAAGAAAGTGTACGTGTGTCCAGAGAAGAGCTGTGTGCACCATGACCCTTGTAGAGCACTGGGAGACTTGACAGGGATAAAGAAACACTATAGCAGAAAACATGGTGAGAAGAAGTGGAAGTGTGAAAAGTGCTCCAAGAAATACGCAGTTCAATCCGATTGGAAGGCCCATACCAAGATTTGTGGGACTAGAGAGTACAAATGTGACTGTGGCACACTTTTCTCCAGGAAGGACAGCTTCATAACACACAGAGCCTTTTGTGATGCATTGGCTGAAGAAAGTGCAAGGATAACTACAGTTCCAGCAGCTTTAAGTAACTTCAGAAATGATCATTTGATGACAAATGCTCAAACCTCAAGGATCCCTCAGATTTTTCCAGGGTTTCATGTTCATTCAGAATTGGGCTCTTCAGGATCAGAACCAATGGGGAATAATTACTCTGAAACAGACCTTGGACAAAAGCTGAGACAGCTCCCACTATGGCTAGACCAGGCTAATTCTCATCAACAACTTCATCATCCCCTTAACTTTCAAAACAAAACAAGTGGTTTCTCATCAGGAGCAAACTCTGCTTGCACCATGCCTGATCTAGTCCAAACAATGGACGTGTTTGGATCACAACAACAGTGGATGAATTACCGGTACCAAGAAGCAGTGCCATTCACAAGTAGTGGAATTAATAACATTTCTTTGCCTCCAAATGGACTGAAGCAAGAACAAGAAGAAAACAAAGGAGAGTTGTCCTTGTCAGATAGTGTGACAAGCTCTTTGTACTTGAGTAATCAGAACCAACAGGGAGGAGAAGGAGGAGGAGGGCCAACCACTCACATGTCAGCCACTGCACTGTTGCAGAAAGCAGCTCAAATGGGATCTACAAACAACAACACATTTGGCTTGATGGGCTCAAACAGGAATAATATTGTTGAGGTTGAGAAATTTTATAAGCAAGGTGAGAACTTGGTGAATTTGGAAGCTAACAACAACATTGGAGGTGGGTATTTATTAAACGATTCAAATGATGTGAATGGGTCGAAGAGTTTGGATCACATGGTAATTATGCCGGTGGATAAAGAGACAACAGTGAAATCAATTATGGGGAAGCAATTACATTCAATAAGTAACAGAAAGGAGCTGGGTTTAACCAGAGACTTTCTTGGTGTTGGAAATGACTCAATAAACAGGACTTTCTTGCAGCAAGAGCTAGGTGAATTCAACGCAATAGGATCATCAGGCATGAACCTGCAGAGCCAGTACAGTGGACACTACTGCTAG | 1575 | 0.4305 | MMSEEAFSASSNTMRVPLVQDPNPNPNPNPNQPKKKRNLPGTPDPDAQVIALSPKSLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKDQVRKKVYVCPEKSCVHHDPCRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHTKICGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARITTVPAALSNFRNDHLMTNAQTSRIPQIFPGFHVHSELGSSGSEPMGNNYSETDLGQKLRQLPLWLDQANSHQQLHHPLNFQNKTSGFSSGANSACTMPDLVQTMDVFGSQQQWMNYRYQEAVPFTSSGINNISLPPNGLKQEQEENKGELSLSDSVTSSLYLSNQNQQGGEGGGGPTTHMSATALLQKAAQMGSTNNNTFGLMGSNRNNIVEVEKFYKQGENLVNLEANNNIGGGYLLNDSNDVNGSKSLDHMVIMPVDKETTVKSIMGKQLHSISNRKELGLTRDFLGVGNDSINRTFLQQELGEFNAIGSSGMNLQSQYSGHYC. | 525 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca3g03838 | 524 | SUPERFAMILY | beta-beta-alpha zinc fingers | 62 | 160 | IPR036236 | - | |
Seca3g03838 | 524 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 63 | 85 | IPR013087 | - | |
Seca3g03838 | 524 | FunFam | protein indeterminate-domain 5, chloroplastic-like | 118 | 197 | - | - | |
Seca3g03838 | 524 | SMART | c2h2final6 | 63 | 85 | IPR013087 | - | |
Seca3g03838 | 524 | SMART | c2h2final6 | 140 | 160 | IPR013087 | - | |
Seca3g03838 | 524 | SMART | c2h2final6 | 105 | 135 | IPR013087 | - | |
Seca3g03838 | 524 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Seca3g03838 | 524 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 24 | 500 | IPR031140 | - | |
Seca3g03838 | 524 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 65 | 85 | IPR013087 | - | |
Seca3g03838 | 524 | MobiDBLite | consensus disorder prediction | 1 | 48 | - | - | |
Seca3g03838 | 524 | FunFam | protein indeterminate-domain 12-like | 42 | 111 | - | - | |
Seca3g03838 | 524 | MobiDBLite | consensus disorder prediction | 331 | 353 | - | - | |
Seca3g03838 | 524 | Gene3D | Classic Zinc Finger | 119 | 197 | - | - | |
Seca3g03838 | 524 | Gene3D | Classic Zinc Finger | 42 | 115 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca3g03838 | Seca-Chr3 | 71878448 | 71881576 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca3g03838 | 34 | 210 | IDZ Gene Family | AT3G45260 | 84.181 | 1.21e-113 | 342 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Seca3g03838 | None | None | None |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca3g03838 | K25870 | - | gmx:100817691 | 607.831 |