Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03838 ATGATGTCTGAAGAAGCCTTTTCTGCTTCTTCCAACACCATGAGAGTTCCCTTGGTTCAAGACCCAAACCCTAATCCTAACCCTAATCCAAATCAACCTAAGAAAAAGAGAAATCTACCAGGAACACCAGATCCAGATGCACAAGTGATAGCTCTGTCACCCAAGTCCCTGATGGCTACCAACCGTTTTGTATGTGAAATCTGCAACAAGGGTTTCCAGAGAGACCAGAATTTGCAGCTGCACCGACGGGGACACAACCTTCCATGGAAGCTGAAGCAAAGAACAAACAAAGATCAAGTGAGGAAGAAAGTGTACGTGTGTCCAGAGAAGAGCTGTGTGCACCATGACCCTTGTAGAGCACTGGGAGACTTGACAGGGATAAAGAAACACTATAGCAGAAAACATGGTGAGAAGAAGTGGAAGTGTGAAAAGTGCTCCAAGAAATACGCAGTTCAATCCGATTGGAAGGCCCATACCAAGATTTGTGGGACTAGAGAGTACAAATGTGACTGTGGCACACTTTTCTCCAGGAAGGACAGCTTCATAACACACAGAGCCTTTTGTGATGCATTGGCTGAAGAAAGTGCAAGGATAACTACAGTTCCAGCAGCTTTAAGTAACTTCAGAAATGATCATTTGATGACAAATGCTCAAACCTCAAGGATCCCTCAGATTTTTCCAGGGTTTCATGTTCATTCAGAATTGGGCTCTTCAGGATCAGAACCAATGGGGAATAATTACTCTGAAACAGACCTTGGACAAAAGCTGAGACAGCTCCCACTATGGCTAGACCAGGCTAATTCTCATCAACAACTTCATCATCCCCTTAACTTTCAAAACAAAACAAGTGGTTTCTCATCAGGAGCAAACTCTGCTTGCACCATGCCTGATCTAGTCCAAACAATGGACGTGTTTGGATCACAACAACAGTGGATGAATTACCGGTACCAAGAAGCAGTGCCATTCACAAGTAGTGGAATTAATAACATTTCTTTGCCTCCAAATGGACTGAAGCAAGAACAAGAAGAAAACAAAGGAGAGTTGTCCTTGTCAGATAGTGTGACAAGCTCTTTGTACTTGAGTAATCAGAACCAACAGGGAGGAGAAGGAGGAGGAGGGCCAACCACTCACATGTCAGCCACTGCACTGTTGCAGAAAGCAGCTCAAATGGGATCTACAAACAACAACACATTTGGCTTGATGGGCTCAAACAGGAATAATATTGTTGAGGTTGAGAAATTTTATAAGCAAGGTGAGAACTTGGTGAATTTGGAAGCTAACAACAACATTGGAGGTGGGTATTTATTAAACGATTCAAATGATGTGAATGGGTCGAAGAGTTTGGATCACATGGTAATTATGCCGGTGGATAAAGAGACAACAGTGAAATCAATTATGGGGAAGCAATTACATTCAATAAGTAACAGAAAGGAGCTGGGTTTAACCAGAGACTTTCTTGGTGTTGGAAATGACTCAATAAACAGGACTTTCTTGCAGCAAGAGCTAGGTGAATTCAACGCAATAGGATCATCAGGCATGAACCTGCAGAGCCAGTACAGTGGACACTACTGCTAG 1575 0.4305 MMSEEAFSASSNTMRVPLVQDPNPNPNPNPNQPKKKRNLPGTPDPDAQVIALSPKSLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKDQVRKKVYVCPEKSCVHHDPCRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHTKICGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARITTVPAALSNFRNDHLMTNAQTSRIPQIFPGFHVHSELGSSGSEPMGNNYSETDLGQKLRQLPLWLDQANSHQQLHHPLNFQNKTSGFSSGANSACTMPDLVQTMDVFGSQQQWMNYRYQEAVPFTSSGINNISLPPNGLKQEQEENKGELSLSDSVTSSLYLSNQNQQGGEGGGGPTTHMSATALLQKAAQMGSTNNNTFGLMGSNRNNIVEVEKFYKQGENLVNLEANNNIGGGYLLNDSNDVNGSKSLDHMVIMPVDKETTVKSIMGKQLHSISNRKELGLTRDFLGVGNDSINRTFLQQELGEFNAIGSSGMNLQSQYSGHYC. 525
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03838 524 SUPERFAMILY beta-beta-alpha zinc fingers 62 160 IPR036236 -
Seca3g03838 524 ProSiteProfiles Zinc finger C2H2 type domain profile. 63 85 IPR013087 -
Seca3g03838 524 FunFam protein indeterminate-domain 5, chloroplastic-like 118 197 - -
Seca3g03838 524 SMART c2h2final6 63 85 IPR013087 -
Seca3g03838 524 SMART c2h2final6 140 160 IPR013087 -
Seca3g03838 524 SMART c2h2final6 105 135 IPR013087 -
Seca3g03838 524 MobiDBLite consensus disorder prediction 1 20 - -
Seca3g03838 524 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 24 500 IPR031140 -
Seca3g03838 524 ProSitePatterns Zinc finger C2H2 type domain signature. 65 85 IPR013087 -
Seca3g03838 524 MobiDBLite consensus disorder prediction 1 48 - -
Seca3g03838 524 FunFam protein indeterminate-domain 12-like 42 111 - -
Seca3g03838 524 MobiDBLite consensus disorder prediction 331 353 - -
Seca3g03838 524 Gene3D Classic Zinc Finger 119 197 - -
Seca3g03838 524 Gene3D Classic Zinc Finger 42 115 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Seca3g03838 Seca-Chr3 71878448 71881576 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03838 34 210 IDZ Gene Family AT3G45260 84.181 1.21e-113 342
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca3g03838 None None None
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03838 K25870 - gmx:100817691 607.831