Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03832 ATGGATCTACACTCAAGGTTTCCTCAGTTTTATTGTTGCTCTGAGGATAGTCTTTTAAGCAAATGTGAACTCAAGATGTTATGGTCCAGGATTAAAGGAACGTGTTATAGAGTTATAGTTCAAAACGAGGAACAAGTGGAGCTTAATTTCTTTCACAAGAATGTGTGGGATCATTCTCTCGAGGGAAAGCTTGACCCCTTAAATATTGACAAAAGGTCCTCGCTCAAAATTTGTGTATCGTTGCCCTTTTGA 252 0.3849 MDLHSRFPQFYCCSEDSLLSKCELKMLWSRIKGTCYRVIVQNEEQVELNFFHKNVWDHSLEGKLDPLNIDKRSSLKICVSLPF. 84
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03832 83 Pfam Rhamnogalacturonate lyase family 20 77 IPR010325 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03832 Seca-Chr3 71736844 71737739 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03832 25 72 Polysaccharide Lyase AT1G09910 56.250 3.36e-11 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03832 K18195 - gmx:100814185 67.781