Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03807 ATGGACTCGACCCAAGACTTGCAGTCCTTACTATCGGAGCAACGCCGAGAGCTCGCTGCTGCGGAAGCCATGGAATCCGACCTCGAATTCGCTTACCGCCTCCAGTTGCAGGAAGCCCTGGCCGCTTCCCTTACAACTCACCCCTCTTCCTCCTCCGTTGTCGTGCAAGAAGAGCCCGCCTCCGACGACACCGTTTTGAAGGCCACGTCTCTCCAGTTGGAGGAGCTCGCGAAGATGGAGCGCGAGATGAAAGACCGGGAGCAGAGCGAGACGGAGATGCGGAAAATGAGGGAGGATCTCAACCGTCGAATTCACGACCAGAAGATGGCGTCGGAGATCATCACCATTCCTGAGGATGATTGGCAGCAATGGGGAGACAATTTCGAGAAGCCATTTGGAGAGGGTTCTTCGAAGAAGGGGGAGGACGAAGGTGCGATTGTTAGGGTTTATTTCAAGGGTTTGGCGAGTGAGGAGAGTGTGAGGGGTGACAAGGCGGTGTTGGCTGGGATTGGGGTTGCGATTTGTGACCTATCTGACAATTTGATACTGGAAGTTTCCAAGCCTCTTATTGGTAATGGAACCAGCAAGGTTGCTACGGAGCTTAAGGCTTTGATCGAAGCCTTTAATGCTGCCATTGCTTTGGACTTACAGCGCGTCATCTATTTTAGCGATTACCATCCCGTCTTTCAATTTGTAAGTGGAAAATGGCCTGTGAAACGGCGGAAGATTGCTATGCTAGTTCATCAGGTGAATCTGCTTCAAAGAAAATTTACATACTGCAGTCCAAGGCTTGTGGCCAGACACGATGTAAAGTTTGCATTTAAACTCGCAAAAGATGCAATTGTTTCCCAGTCCACAAAGCCTGTGGAATCTGGCAGTAGTAAGAGTCTGAATGAAACTTGTGTCATATGTTTAGAAGATACTGATATCAATCAAATTTTTTCGGTTGATGGCTGTCAACACCGGTATTGCTTTTCCTGCATGAAACAACATGTGGAGGTGAAGTTGCTCCATGGAATGGTGCCAAAATGCCCTCATGACGGATGCAATTATGATCTTCTACTTGACAGTTGCCGGAAATTCTTGACTCATAAACTAATTGAGACCATGCAGCAACGGAAAATGGAAGCCTCAATTCCAGTTGCTGAGAAAATTTATTGTCCTTATCCAAGATGCTCTGCATTAATGTCAAAAACTGAGGTTTTAGAATACTCCAAAAATCTTATTGGTGACTCTGATCAATCAGGACCCAAGAAATGCGTGAAATGTCATGGTCTTTTCTGTTTCAGCTGCAAGGTCCCTTGGCATAGTGGTATGACATGTTATACTTACAAGAGGTTGAATCCTAACCCGCCAGCAGAAGACTTGAAGCTGAAGTCTCTGGCAACAAGGAGTCTTTGGCGGCAGTGTGTGAAGTGTAACCATATGATCGAACTTGCTGAAGGCTGCTATCACATGACTTGCAGATGTGGTTATGAATTTTGCTATAACTGTGGAGCTCAGTGGAAGGACAAAAAAGCAACATGTTCTTGTCCACTTTGGGTCGAGGACAATATTTGGTTAGAAAATCATGAGGGGGAATGGGAAGAAGAGGAAGAAGATCTTGATAGCGATGAAGAGGGATATCATCATTATATCTCTGATTATTCTGATGGATTTTATTAA 1665 0.4589 MDSTQDLQSLLSEQRRELAAAEAMESDLEFAYRLQLQEALAASLTTHPSSSSVVVQEEPASDDTVLKATSLQLEELAKMEREMKDREQSETEMRKMREDLNRRIHDQKMASEIITIPEDDWQQWGDNFEKPFGEGSSKKGEDEGAIVRVYFKGLASEESVRGDKAVLAGIGVAICDLSDNLILEVSKPLIGNGTSKVATELKALIEAFNAAIALDLQRVIYFSDYHPVFQFVSGKWPVKRRKIAMLVHQVNLLQRKFTYCSPRLVARHDVKFAFKLAKDAIVSQSTKPVESGSSKSLNETCVICLEDTDINQIFSVDGCQHRYCFSCMKQHVEVKLLHGMVPKCPHDGCNYDLLLDSCRKFLTHKLIETMQQRKMEASIPVAEKIYCPYPRCSALMSKTEVLEYSKNLIGDSDQSGPKKCVKCHGLFCFSCKVPWHSGMTCYTYKRLNPNPPAEDLKLKSLATRSLWRQCVKCNHMIELAEGCYHMTCRCGYEFCYNCGAQWKDKKATCSCPLWVEDNIWLENHEGEWEEEEEDLDSDEEGYHHYISDYSDGFY. 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03807 554 SUPERFAMILY Ribonuclease H-like 170 272 IPR012337 -
Seca3g03807 554 ProSitePatterns Zinc finger RING-type signature. 319 328 IPR017907 -
Seca3g03807 554 SUPERFAMILY RING/U-box 299 380 - -
Seca3g03807 554 ProSiteProfiles TRIAD supradomain profile. 297 521 IPR044066 -
Seca3g03807 554 Pfam Reverse transcriptase-like 164 280 IPR002156 GO:0003676|GO:0004523
Seca3g03807 554 FunFam RBR-type E3 ubiquitin transferase 147 284 - -
Seca3g03807 554 Coils Coil 66 99 - -
Seca3g03807 554 Gene3D - 147 287 IPR036397 GO:0003676
Seca3g03807 554 FunFam RBR-type E3 ubiquitin transferase 296 381 - -
Seca3g03807 554 SMART ibrneu5 454 511 IPR002867 GO:0008270
Seca3g03807 554 SMART ibrneu5 368 441 IPR002867 GO:0008270
Seca3g03807 554 Coils Coil 4 24 - -
Seca3g03807 554 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 140 523 IPR031127 GO:0004842|GO:0016567
Seca3g03807 554 CDD Rcat_RBR_unk 467 502 - -
Seca3g03807 554 FunFam RBR-type E3 ubiquitin transferase 439 552 - -
Seca3g03807 554 SUPERFAMILY RING/U-box 455 518 - -
Seca3g03807 554 Gene3D - 439 552 - -
Seca3g03807 554 Pfam IBR domain, a half RING-finger domain 456 509 IPR002867 GO:0008270
Seca3g03807 554 Pfam IBR domain, a half RING-finger domain 371 441 IPR002867 GO:0008270
Seca3g03807 554 ProSiteProfiles Zinc finger RING-type profile. 301 347 IPR001841 -
Seca3g03807 554 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 294 382 IPR013083 -
Seca3g03807 554 CDD BRcat_RBR_unk 381 441 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03807 Seca-Chr3 70956560 70961513 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03807 148 500 C3H Transcription Factor Family AT2G19610 35.196 1.29e-66 220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03807 - - aprc:113858620 874.774