Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03805 ATGGAAAGCAGTGGCAGTGACACATACACCCCTACTTCCTCTGCCCCACTTTCTCAATCTCCAACTTCCTCATCCTCCTCACCACCTCCTCCTCCTCAAGTTGTCATGAGCCCTTGTGCTGCATGCAAGATTTTGAGGAGAAGATGTGCTGAAAAATGTGTCTTGGCACCTTATTTTCCTCCCACTGAACCTGCCAAGTTTACCATTGCTCACAGAGTCTTTGGTGCCAGCAACATCATCAAGTTCTTACAGGAGCTTCCAGAGTCTCAAAGAGCAGATGCAGTGACTAGTATGGTTTATGAGGCTAGTGCAAGAATAAGAGACCCAGTTTATGGTTGTGCAGGGGCAATTTGCCAGCTCCAAAAACAGGTCAATGAGCTTCAAGCACAATTAGCCAAGGCACAAGCTGAGCTTGTAAACATGCAATTGCAGCAAGCCAATCTTGTGGCTTTAATTTGCATGGAAATGGCACAAAGTCCACAGGAATCACCACAACAATCAGTGGATAATTTCATTACAAGTCCTCCTCACAACACTGGCTATCAAAATGGTATGAACTTCCTTGAGGAGAACACTAGCCTAAACTCATTGTGGGAGCCACTTTGGACATGA 612 0.4559 MESSGSDTYTPTSSAPLSQSPTSSSSSPPPPPQVVMSPCAACKILRRRCAEKCVLAPYFPPTEPAKFTIAHRVFGASNIIKFLQELPESQRADAVTSMVYEASARIRDPVYGCAGAICQLQKQVNELQAQLAKAQAELVNMQLQQANLVALICMEMAQSPQESPQQSVDNFITSPPHNTGYQNGMNFLEENTSLNSLWEPLWT. 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03805 203 ProSiteProfiles LOB domain profile. 37 138 IPR004883 -
Seca3g03805 203 Pfam Lateral organ boundaries (LOB) domain 38 135 IPR004883 -
Seca3g03805 203 MobiDBLite consensus disorder prediction 1 22 - -
Seca3g03805 203 Coils Coil 117 144 - -
Seca3g03805 203 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 37 166 - -
Seca3g03805 203 MobiDBLite consensus disorder prediction 1 32 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03805 Seca-Chr3 70842704 70844876 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03805 33 203 AS2 family AT1G07900 67.241 1.65e-80 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Seca3g03805 LOB 1.8e-41 No_clan