Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03800 ATGGGGAAAACACGTGGTATGGGAGCTGCTCGCAAGTTGAAGTCCCACCGTAGAAGGCAGAGGTGGGCTGACAAGGCATACAAGAAATCAAATCTTGGAAATGAATGGAAAAAGCCATTCGCTGGGTCATCTCATGCCAAAGGCATTGTTCTTGAAAAAATGTTTGAGCGATTGACCGTTTTTTACAGTGGCATTGAGGCTAAGCAGCCAAACTCTGCTATTAGAAAATGTGCTCGAGTACAGTTAATCAAGAATGGAAAGAAGATTGCAGCTTTTGTGCCAAATGATGGTTGTTTGAACTATATTGAAGAAAATGATGAAGTGCTTATTGCTGGTTTTGGCCGAAAAGGGCACGCCGTCGGAGATATTCCTGGAGTCCGATTTAAGGTTGTGAAGGTATCTGGGGTGTCTCTTCTCGCTCTCTTTAAAGAGAAGAAGGAAAAGCCTAGGTCTTGA 456 0.4364 MGKTRGMGAARKLKSHRRRQRWADKAYKKSNLGNEWKKPFAGSSHAKGIVLEKMFERLTVFYSGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS. 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03800 151 SUPERFAMILY Nucleic acid-binding proteins 20 149 IPR012340 -
Seca3g03800 151 FunFam 40S ribosomal protein S23 25 151 - -
Seca3g03800 151 ProSitePatterns Ribosomal protein S12 signature. 68 75 IPR006032 GO:0003735|GO:0005840|GO:0006412
Seca3g03800 151 NCBIfam 30S ribosomal protein S12 6 150 IPR005680 GO:0003735|GO:0006412|GO:0015935
Seca3g03800 151 MobiDBLite consensus disorder prediction 9 24 - -
Seca3g03800 151 PANTHER 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER 1 151 IPR006032 GO:0003735|GO:0005840|GO:0006412
Seca3g03800 151 Pfam Ribosomal protein S12/S23 32 150 IPR006032 GO:0003735|GO:0005840|GO:0006412
Seca3g03800 151 Gene3D - 25 151 IPR012340 -
Seca3g03800 151 PIRSF RPS12p_RPS12a_RPS23e_RPS12o 16 151 IPR006032 GO:0003735|GO:0005840|GO:0006412
Seca3g03800 151 CDD Ribosomal_S23 26 148 IPR005680 GO:0003735|GO:0006412|GO:0015935
Seca3g03800 151 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03800 Seca-Chr3 70708805 70710966 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03800 1 151 Cytoplasmic Ribosomal Protein Gene Family AT5G02960 88.742 9.03e-92 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03800 K02973 - twl:119995137 276.944