Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03799 ATGGATCCTTCCAGTGGACAACACCAGCAGCAAATGTCTAGCCAATCATTGGAGAACATGTTAGCTTGTTCAAAGGCACAACAAGAGAGAAAGCCAAGACCTCAGCCAGAACAAGCTCTAAAATGCCCAAGATGTGACTCCAACAACACCAAATTCTGTTACTACAACAATTACAGTCTCTCACAGCCAAGATATTTCTGCAAGTCTTGCAGAAGATATTGGACAAAAGGAGGGACATTGAGGAATGTTCCTGTGGGTGGAGGGTGCAGGAAGAACAAGAGATCATCATCATCCTCTGCATCATCAAAGAGGGCTCAAGATCAAGCATTCAATATTCCCAATCCCAATAACCCACTCACTGGTTTCCCTCAATTGTCTTATGACTCTAGTGATCTTACCCTTGCATTGGCCAGGCTCCAAAAGGGCCATCAAATGGGTTTTGATGAACATGATCTTTCAATTTTGGGGAACCACACAAGCACCCCATGTGATATTCTGGGCAATAATCCAGGAATGAACACTAACCCTGCAGGGTTCTTAGATGCACTTAGAAGTGGGTTCCTTGGAAACCAAAATCATGTGTACTATGGATATGGGAATGGGGGTGACATGGGGGAAGTGGACAATGGAAATGCTTGTGGGGTTGGGGTTAGTGGAGAAATGATGTTGCCTTATGATCAAGAAATGAGTATTGCCACAACTCAAGCAGTGACTGTCACTACCATGAAACAAGAGCTATGTAATGGCAGGGAACAACAAAGTGAGAGTAAGGTGTTGTGGGGTTTCCCTTGGCAGATCAATGGAGACACAAACATGGGTGAACTTGATTCAGGAAGAGCTAGTTGGAATGGTCTTACATCATCTTGGCATGGCCTTCTCAATAGTCCCCTAATGTAG 897 0.4437 MDPSSGQHQQQMSSQSLENMLACSKAQQERKPRPQPEQALKCPRCDSNNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSSSSASSKRAQDQAFNIPNPNNPLTGFPQLSYDSSDLTLALARLQKGHQMGFDEHDLSILGNHTSTPCDILGNNPGMNTNPAGFLDALRSGFLGNQNHVYYGYGNGGDMGEVDNGNACGVGVSGEMMLPYDQEMSIATTQAVTVTTMKQELCNGREQQSESKVLWGFPWQINGDTNMGELDSGRASWNGLTSSWHGLLNSPLM. 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03799 298 MobiDBLite consensus disorder prediction 91 123 - -
Seca3g03799 298 ProSiteProfiles Zinc finger Dof-type profile. 40 94 IPR003851 GO:0003677|GO:0006355
Seca3g03799 298 MobiDBLite consensus disorder prediction 84 123 - -
Seca3g03799 298 ProSitePatterns Zinc finger Dof-type signature. 42 78 IPR003851 GO:0003677|GO:0006355
Seca3g03799 298 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 14 191 IPR045174 GO:0003700|GO:0006355
Seca3g03799 298 MobiDBLite consensus disorder prediction 1 23 - -
Seca3g03799 298 Pfam Dof domain, zinc finger 38 94 IPR003851 GO:0003677|GO:0006355
Seca3g03799 298 MobiDBLite consensus disorder prediction 1 41 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03799 Seca-Chr3 70703906 70705828 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03799 1 298 C2C2-Dof Transcription Factor Family AT2G28510 40.774 9.06e-57 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Seca3g03799 zf-Dof 1.1e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03799 - - gmx:100799737 457.603