Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03768 ATGCCCCCTGATAGCACGTGTGCCCAAGTGATGCATACAAAGCCTGAAAAAGTCAGTAGTATATGGGTGCATGCGACAGAAAAAGAGTGCCATGAACTAATTGATCATCTTGATGATGTCGCAATGGGTAAAGACTTGGCTATGGGAATATCTCTGAATATTCAACTAGAGCATCCACCTGAGGAACTGTCTAGCAATCCAATGGGTAAAGGGACAAATAAGATGTCTGATATGGATCGCATGCAGCTGATTAAAGGACAGAGTAATGTCTGTGAAAAAGGAAAACTGGAATACAACGGTGATAAAACCAGGACACAGGAAAATCAAGCTATGAATGTTGTTGATGTTACTGATAGCAACAGTCCACAGGCTGAAAGCAGAGACTTGAACACTCCAAATGGGTTTTCTGGCTTCTCACAAACAAAAGCAAGCAGTTCCTTCAAACAGCATCCATCCCTCGAACTAACTTTGAAGAGGCTGGGAGAAGTAAGAGATGTTAAAAATGTCACAGGTGATGAATGCAATATTTTGAGACATTCAGATCTGTCAGCATTCTCAAAATATAATACTGCTTCTTCTGCTAATCAGGCTCAAACTGGAAATGGTGGAAGCTGTTCCCCCCTAGACAATAGCTCAGTTGCACCAAATACAGAGATAATACACAACTTTCCATCTAATTCAAATGGCACACCTCGAAATCAACAGTCTAATGAGAGCAACAACATCAATGACATGGCCTCCACTAATACATATCTTAGCACTAAACCTGAAACTTTTGACAAGAAGCCAGAGTCTGTAAGAGGGATTGGCTCATTTAATTCTTCTGAACTCCAGACTGTGCAGAACAATAGTATCTCTTCATCTCAGAAGAAAACTTCTGCCCAAGAAGAATATGCAGAAATTGTTAGAGGACAAGTGGGAGGCTCTGAACAAGGATTCCAAGTCGAGCACACTCATTATCAGCTTCAGCATCATAATCACGTTGCCCATAGAGCCACAGTAGATCTCCAATCAGACCATGATCTTTTACGAAAAAGCTCAAGCAAAGCTACTCAGCAATGTGTATCATCAAATGCGTTTGGACCAGCAGAAAGCAATGCTGCAAACTATGGGTTGGATGGAAATGCAGCTGAGAGCGATCATGGGAGCAATGGACAGGACGGAAGCAATAGCTTGACAATAAGAACAATGAATATGGAGAATGGCAATGTGGCTGCTGGGAGTTTTGGAGTTGGTGGCATTGATAGGATAAACATTGTGAATGGGGTAGATGAAGGACGAATTGCGTTGAGAGAGGCTGCCTTGACCAAATTTCGCCAAAAGAGAAAAGAAAGATGCTTTGAAAAGAGGGTTCGATATCACAGCAGGAAAAAACTAGCAGAACAGCGGCCACGTATAAGGGGGCAATTTGTAAGACGAATAGTGTATGTTGCTGCCTGCTTGGGTCCGATACCATAG 1458 0.4232 MPPDSTCAQVMHTKPEKVSSIWVHATEKECHELIDHLDDVAMGKDLAMGISLNIQLEHPPEELSSNPMGKGTNKMSDMDRMQLIKGQSNVCEKGKLEYNGDKTRTQENQAMNVVDVTDSNSPQAESRDLNTPNGFSGFSQTKASSSFKQHPSLELTLKRLGEVRDVKNVTGDECNILRHSDLSAFSKYNTASSANQAQTGNGGSCSPLDNSSVAPNTEIIHNFPSNSNGTPRNQQSNESNNINDMASTNTYLSTKPETFDKKPESVRGIGSFNSSELQTVQNNSISSSQKKTSAQEEYAEIVRGQVGGSEQGFQVEHTHYQLQHHNHVAHRATVDLQSDHDLLRKSSSKATQQCVSSNAFGPAESNAANYGLDGNAAESDHGSNGQDGSNSLTIRTMNMENGNVAAGSFGVGGIDRINIVNGVDEGRIALREAALTKFRQKRKERCFEKRVRYHSRKKLAEQRPRIRGQFVRRIVYVAACLGPIP. 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03768 485 MobiDBLite consensus disorder prediction 194 267 - -
Seca3g03768 485 ProSiteProfiles CCT domain profile. 431 473 IPR010402 GO:0005515
Seca3g03768 485 MobiDBLite consensus disorder prediction 379 393 - -
Seca3g03768 485 MobiDBLite consensus disorder prediction 194 256 - -
Seca3g03768 485 MobiDBLite consensus disorder prediction 118 149 - -
Seca3g03768 485 MobiDBLite consensus disorder prediction 370 393 - -
Seca3g03768 485 Pfam CCT motif 431 472 IPR010402 GO:0005515
Seca3g03768 485 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 149 473 IPR045281 GO:0009909
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03768 Seca-Chr3 70064973 70071028 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03768 4 475 Response Regulator Gene Family AT5G02810 33.537 7.99e-41 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca3g03768 CCT 1e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03768 K12129 - gmx:100785796 639.802