Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03715 ATGTCTTATGATTCTGGGCAATCTGGTTCACCTTCTCAATGGAAAATAGGAGAGGTTTTTACAATTATTATTGTATGGTCCATCTTCTTTATATTCATTTACTATGGCCTATTTAAGAGTCTCTTCCTAATTATCTACCGTGCAATCACCACTAGAAACCTGGTTCAAAGGAGGCTTCTAGAAGGGTCCAATTCCAATCCCAGGGATCCTTCTCTGCAGCTTGAAAGCTGTGGGTTGGACTTGTCTGTGGTACACACACTTCCCATGTCACAGTTTAAGAAAAATGAGGGTGAACAAAAGGGGAGTAACGCGGATTGTGCCATTTGTCTTGGAGAGTTTGAAGAAGGGGAATGGCTAAAACATCTTCCATATTGTACACATGTCTTTCATGGTTCTTGCATTGACACATGGTTTCAGTCTAATTCAAATTGTCCCCTCTGCAGATCTTATGTACTTCATGACTACTTCCCTGACAACATAGATCATGTGCCAAGCTCTGAAGACATTTTCCATTCGCTTTGA 522 0.408 MSYDSGQSGSPSQWKIGEVFTIIIVWSIFFIFIYYGLFKSLFLIIYRAITTRNLVQRRLLEGSNSNPRDPSLQLESCGLDLSVVHTLPMSQFKKNEGEQKGSNADCAICLGEFEEGEWLKHLPYCTHVFHGSCIDTWFQSNSNCPLCRSYVLHDYFPDNIDHVPSSEDIFHSL. 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03715 173 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
Seca3g03715 173 Pfam Ring finger domain 105 148 IPR001841 -
Seca3g03715 173 SMART ring_2 106 147 IPR001841 -
Seca3g03715 173 FunFam E3 ubiquitin-protein ligase ATL6 68 154 - -
Seca3g03715 173 PANTHER RING-H2 FINGER PROTEIN ATL16 12 156 IPR044600 GO:0016567|GO:0016740
Seca3g03715 173 CDD RING-H2_EL5-like 105 148 - -
Seca3g03715 173 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 81 152 IPR013083 -
Seca3g03715 173 SUPERFAMILY RING/U-box 98 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03715 Seca-Chr3 67020745 67021266 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03715 73 167 C3H Transcription Factor Family AT5G10380 44.444 4.30e-21 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03715 - - aprc:113859782 183.726