Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03710 ATGATTCAACAGGAAATCAGAAAAGGTCCCTGGACAGAACAGGAGGACTTCAAATTGGTGTATTTTGTTGGGCTATTTGGAGATCGTAGATGGGACTTTATAGCTAAGGTTTCAGGTTTGAGTAGAACAGGTAAAAGTTGCAGGTTACGTTGGGTTAATTACCTGCATCCTGATCTCAAACGAGGGAAGATGACACCTCAAGAAGAACGCCTTGTCATCGAGCTTCACTCCAAATGGGGAAATAGCAGATGGTCACGAATTGCTCGCAAATTGCCAGGGCGCACAGATAATGAGATTAAGAATTACTGGAGGACTCACATGAGGAAAAAGAAGGCGATGGAGAAAAAGCGTGCTGCTGTTGCTGCAGCAGCAGCATCACCTTCATCTTCTAGTTGTCAATCCTCAGAATCATCAAATAATCAAGGTGTTGATTCCAAAGAATCTAGCGAAGAAAGCTTTTATGACACAGGTGGACCTGATAACATGATGACAGGCTCAACAGGAATTGATATTGTTGGGGAAGATGGAGAACAGGGGTACTCTATGGATGATATATGGAAAGATATTGCTATGTCAATAGATAATAACAACATGAATCTGCAACCACCAGTGAGTGAAGAAGGCTGCAATTTCTCTTGTCCTCCTCTTCTTCCATCATGGGATTATAATTATTCTTCAGATCAACTATGGGTGATGGATGAATTAGAAGAAAGCAAGATGTTATTCCCTGTAGGTGATCAATATTTTTCGTGCTATGGTGAAGGAAGCGCATTTTTAACCGGTTAA 786 0.4135 MIQQEIRKGPWTEQEDFKLVYFVGLFGDRRWDFIAKVSGLSRTGKSCRLRWVNYLHPDLKRGKMTPQEERLVIELHSKWGNSRWSRIARKLPGRTDNEIKNYWRTHMRKKKAMEKKRAAVAAAAASPSSSSCQSSESSNNQGVDSKESSEESFYDTGGPDNMMTGSTGIDIVGEDGEQGYSMDDIWKDIAMSIDNNNMNLQPPVSEEGCNFSCPPLLPSWDYNYSSDQLWVMDELEESKMLFPVGDQYFSCYGEGSAFLTG. 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03710 261 Gene3D - 8 60 - -
Seca3g03710 261 FunFam Myb transcription factor 8 60 - -
Seca3g03710 261 ProSiteProfiles Myb-like domain profile. 3 55 IPR001005 -
Seca3g03710 261 Pfam Myb-like DNA-binding domain 61 106 IPR001005 -
Seca3g03710 261 Pfam Myb-like DNA-binding domain 8 55 IPR001005 -
Seca3g03710 261 MobiDBLite consensus disorder prediction 114 167 - -
Seca3g03710 261 Gene3D - 64 110 - -
Seca3g03710 261 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 3 55 IPR017930 -
Seca3g03710 261 SUPERFAMILY Homeodomain-like 5 103 IPR009057 -
Seca3g03710 261 FunFam MYB transcription factor 63 135 - -
Seca3g03710 261 MobiDBLite consensus disorder prediction 124 147 - -
Seca3g03710 261 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 3 154 IPR044676 GO:0003700|GO:0006355|GO:0043565
Seca3g03710 261 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 56 111 IPR017930 -
Seca3g03710 261 SMART sant 7 57 IPR001005 -
Seca3g03710 261 SMART sant 60 109 IPR001005 -
Seca3g03710 261 CDD SANT 10 55 IPR001005 -
Seca3g03710 261 ProSiteProfiles Myb-like domain profile. 56 107 IPR001005 -
Seca3g03710 261 CDD SANT 63 107 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03710 Seca-Chr3 66952240 66953728 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03710 1 259 MYB Transcription Factor Family AT5G59780 55.849 1.76e-79 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca3g03710 Myb_DNA-binding 2.1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03710 K09422 - gmx:100776886 334.339