Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03707 ATGAAGAGATGCAGAGTCGATGATGAGGGTGAGGTAGATGAAATGGCTAATTGTTTGATGTTACTGTCCAAAATTGGTGACCCATCCAGAGAGAGAGTTTTGAAGGGTGGGACTGGGGGTGGGGGATTTAGGTGCAAGACTTGTAACAGACAGTTCCTTTCTTTTCAAGCCCTTGGGGGCCACAGAGCCAGCCACAAGAAGCTAAAGCTCATGGATACAGACCTTGCTTCCTGCCTGCAGTTATTACCAACCAAGAAACTCAAGATGCATATGTGCCCTGTTTGTGGCCTTGAGTTTGAGATTGGACAAGCGCTAGGAGGACACATGAGGAAGCATAGAGCTGCAGTGCCCACAATATCTAATGTAGCTACTACAAAGTTTCAAGATTTGTGCTTGGATTTGAACTTGACACCCTACGAGAATGATATGAACCTCAACTTAAGGACACCTGTATTAAATTTTTCTATTTGA 471 0.4437 MKRCRVDDEGEVDEMANCLMLLSKIGDPSRERVLKGGTGGGGFRCKTCNRQFLSFQALGGHRASHKKLKLMDTDLASCLQLLPTKKLKMHMCPVCGLEFEIGQALGGHMRKHRAAVPTISNVATTKFQDLCLDLNLTPYENDMNLNLRTPVLNFSI. 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03707 156 ProSitePatterns Zinc finger C2H2 type domain signature. 92 112 IPR013087 -
Seca3g03707 156 PANTHER ZINC FINGER PROTEIN ZAT5 9 141 - -
Seca3g03707 156 Pfam C2H2-type zinc finger 90 114 - -
Seca3g03707 156 Pfam C2H2-type zinc finger 43 67 - -
Seca3g03707 156 ProSiteProfiles Zinc finger C2H2 type domain profile. 43 70 IPR013087 -
Seca3g03707 156 ProSitePatterns Zinc finger C2H2 type domain signature. 45 65 IPR013087 -
Seca3g03707 156 ProSiteProfiles Zinc finger C2H2 type domain profile. 90 117 IPR013087 -
Seca3g03707 156 SUPERFAMILY beta-beta-alpha zinc fingers 43 112 IPR036236 -
Seca3g03707 156 Gene3D Classic Zinc Finger 41 112 - -
Seca3g03707 156 SMART c2h2final6 90 112 IPR013087 -
Seca3g03707 156 SMART c2h2final6 43 65 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03707 Seca-Chr3 66891178 66891648 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03707 1 147 C2H2 Transcription Factor Family AT2G28710 44.848 1.39e-31 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca3g03707 zf-C2H2_6 1.7e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03707 - - gmx:112998408 175.637