Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03690 ATGTCTGCAGCTCTGGATATGACCCTCGACGATATCATCAAGAACAACAAAAAGTCTGCATCCGGAAACTCCAGGGGCCGCGCCCGAGGCTCCGGACCCGGACCCGCTCGCCGCTCCTCCAACCGTGCCGCCAACCGCGCCACACCCTACGCCGCCGCCAGGGCGCCGGAGACGACGTGGCAGCACGATATGTATGCAGATCAGCATGTGGCTGCGGCGGCGTACCCAGCTCAAGGTGGTCGTGCGCCTTCCATAGAAACCGGGACCAAGCTCTATATATCTAATTTGGATTATGGTGTTTCCAACGATGATATTAAGGAATTGTTTTCTGAAGTTGGTGACATGAAACGGCATGGTGTTCATTATGACAGGAGTGGCAGATCGAAGGGTACAGCAGAAGTAGTCTTCTCACGACGAGTTGATGCTGTTGCTGCTGTGAAGAGATACAACAATGTTCAACTAGATGGGAAGCCAATGAAGATAGAGATTGTGGGAACAAATATTTCTACACCTGGAGTGGCTCCTGCAGCAAATGTAGCTATTGGAAACTCAAATGGAGTTCCTCAAATTAGACAAGGAAGAGGTGGGGCATTACGAAGGCCAGGAGGTAGAGGGCAAGGCATTCGAAGGGATAGAGGACGGGGAAGAGGTCGTGGTGGAGGTCGTGGCGAAAAGGTATCTGCAGAAGATCTTGATGCTGATTTGGAGAAGTATCATTCAGAGGCAATGCAATTGAACTGA 741 0.5142 MSAALDMTLDDIIKNNKKSASGNSRGRARGSGPGPARRSSNRAANRATPYAAARAPETTWQHDMYADQHVAAAAYPAQGGRAPSIETGTKLYISNLDYGVSNDDIKELFSEVGDMKRHGVHYDRSGRSKGTAEVVFSRRVDAVAAVKRYNNVQLDGKPMKIEIVGTNISTPGVAPAANVAIGNSNGVPQIRQGRGGALRRPGGRGQGIRRDRGRGRGRGGGRGEKVSAEDLDADLEKYHSEAMQLN. 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03690 246 Gene3D - 66 229 IPR012677 -
Seca3g03690 246 SMART rrm1_1 90 162 IPR000504 GO:0003723
Seca3g03690 246 SMART FoP_duplication_2 177 246 IPR025715 -
Seca3g03690 246 MobiDBLite consensus disorder prediction 204 239 - -
Seca3g03690 246 MobiDBLite consensus disorder prediction 1 52 - -
Seca3g03690 246 FunFam THO complex subunit 4 82 228 - -
Seca3g03690 246 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 5 244 - -
Seca3g03690 246 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 89 166 IPR000504 GO:0003723
Seca3g03690 246 MobiDBLite consensus disorder prediction 185 246 - -
Seca3g03690 246 CDD RRM_THOC4 89 163 - -
Seca3g03690 246 Pfam C-terminal duplication domain of Friend of PRMT1 190 241 IPR025715 -
Seca3g03690 246 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 91 159 IPR000504 GO:0003723
Seca3g03690 246 SUPERFAMILY RNA-binding domain, RBD 73 165 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03690 Seca-Chr3 66627605 66631984 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03690 88 195 Eukaryotic Initiation Factors Gene Family AT2G23350 30.400 8.51e-09 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03690 K12881 - gmx:100775827 331.643