Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03672 ATGGAGAGTGCTGCTCAGAATGAGGAAGTAGTGGAGATGGGAATGGGAGGGTCGAGTGGGATTCCAGCAAGTTCGCGATGGAACCCTACAAAAGAGCAAATAAGCATGTTAGAGAATCTCTATAAACAGGGAATAAAAACTCCCACTGCTGAAGAGATACAACAGATAACAGCTAGGCTCAGGGCGTATGGTCACATCGAAGGAAAGAATGTCTTCTACTGGTTTCAGAATCACAAAGCCAGGCAGAGACAGAAGCAGAAGCAAGAAAGCATCGCTTATTTCAATCGATTTCTTCATAGGCCTCAGCCCATTTTCTCTCCTCCAATTTGTCCAAACGCCCTCTGCGCACCGTATTGCATTCCTCAGGCACAGAGTGAGATTGGCTTTTATCCCCAGCATTCAAAGGTGCTTGTACCCATGGGTTTTAGGAGAAGCCCGGGTGAGAAAGTTGTGGCAAACGGTATCTGTGATGGCCCAGTGGTATATGAAGGCATGCAACAGAGGGTAACAGAATATAACTTTAGCTACAGTAACCAAGAAACGTTGGATCTCTTTCCTCTGCACCCAACTGGGATCTTGGAAGGGAAAACAACAGACCAGGTGTCTTCTATGGCTTCAGTTTCTGCTGATAGTTCCACTGATACACATTCTGATATCAATGAAGAAGATGGCTGTCAAGAAAATCAAACCTTCTTTGACTTTTTTAATTCCAGACGAGGTTATTAA 726 0.4463 MESAAQNEEVVEMGMGGSSGIPASSRWNPTKEQISMLENLYKQGIKTPTAEEIQQITARLRAYGHIEGKNVFYWFQNHKARQRQKQKQESIAYFNRFLHRPQPIFSPPICPNALCAPYCIPQAQSEIGFYPQHSKVLVPMGFRRSPGEKVVANGICDGPVVYEGMQQRVTEYNFSYSNQETLDLFPLHPTGILEGKTTDQVSSMASVSADSSTDTHSDINEEDGCQENQTFFDFFNSRRGY. 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03672 241 Gene3D - 24 92 - -
Seca3g03672 241 ProSiteProfiles 'Homeobox' domain profile. 20 85 IPR001356 GO:0003677
Seca3g03672 241 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 9 218 IPR044555 GO:0003700|GO:0099402
Seca3g03672 241 SMART HOX_1 22 89 IPR001356 GO:0003677
Seca3g03672 241 CDD homeodomain 26 86 IPR001356 GO:0003677
Seca3g03672 241 SUPERFAMILY Homeodomain-like 25 93 IPR009057 -
Seca3g03672 241 Pfam Homeodomain 24 84 IPR001356 GO:0003677
Seca3g03672 241 FunFam WUSCHEL-related homeobox 4 24 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03672 Seca-Chr3 66160043 66161728 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03672 18 235 Wox Gene Family AT5G59340 42.857 2.98e-55 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Seca3g03672 Homeodomain 8.1e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03672 - - pvu:PHAVU_011G064900g 357.066