Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03670 ATGGTTTTCTCTTCTATTCCAGTCTATGTAGATCCTCCCAATTGGCAGCACCAGCAACCAACTCATCATCACCATCATCACCAAGCAAATGGCAGTGAGCTTCTTCCACCTTTGCCTCCTCAAGTTGGTGGAGGTGGAAGCAGTGGTGGTTCAATCAGGCCAGGCTCCATGGCAGATCGAGCGCGGTTAGCTAAGATTCCACCTCCTGAAGCAGCTTTAAAGTGTCCGCGTTGTGATTCAACCAACACTAAATTTTGTTACTTCAATAACTACAGCCTCTCTCAACCCCGTCACTTTTGCAAGACTTGTAGGCGTTACTGGACAAGAGGTGGTGCTCTTAGAAATGTCCCTGTTGGTGGAGGGTGTAGAAGAAACAAGAAGAACAAAAGAAGCCGCTCAAAATCTCCTGCAAATACATCTCATGACAAACAACAAACACTCTCAACAACTTCTTCAACTGCTGCAGCAGCAGCAGCAACAACCACTCATGAGCTAATTGGTCAGTTACCACAACCAACTAACTTACCCTTCATGGCCTCTCTCCAGAATCTGAACCGTTATTCTGTTGGAAATATGGGCCTTGGTTTGCGTGAGATTCAAGGACAGACAACAGATCACATGGGGTTTCAAATGGCTAACAGTAATTCTGTTAGTGGTGTGGATCAGTGGCGGTTACAACAATTTCCTTTCTTGAACGGTTTTGAATCAGGTTCAGGTGGTTCGTTCCCTTTTCAAAGTGAAGGTGAAGGGTTGGTTGGAGATATAAGTACAAGTAATAGGGTTACTCAACTGCCATCAGTTAAGATGGAAGAAAATGGAGCTTTGAATTTGACAAGAGCACCTCTTGGTGGTACTGTCTCAGAACATAACCAATTTTATTCATGGAGTGATATGTCAGGTCTTGCTTCTAATTCTTCCACTACTCATCTCTTGTAA 936 0.4412 MVFSSIPVYVDPPNWQHQQPTHHHHHHQANGSELLPPLPPQVGGGGSSGGSIRPGSMADRARLAKIPPPEAALKCPRCDSTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKKNKRSRSKSPANTSHDKQQTLSTTSSTAAAAAATTTHELIGQLPQPTNLPFMASLQNLNRYSVGNMGLGLREIQGQTTDHMGFQMANSNSVSGVDQWRLQQFPFLNGFESGSGGSFPFQSEGEGLVGDISTSNRVTQLPSVKMEENGALNLTRAPLGGTVSEHNQFYSWSDMSGLASNSSTTHLL. 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03670 311 Pfam Dof domain, zinc finger 72 127 IPR003851 GO:0003677|GO:0006355
Seca3g03670 311 ProSitePatterns Zinc finger Dof-type signature. 75 111 IPR003851 GO:0003677|GO:0006355
Seca3g03670 311 MobiDBLite consensus disorder prediction 138 153 - -
Seca3g03670 311 ProSiteProfiles Zinc finger Dof-type profile. 73 127 IPR003851 GO:0003677|GO:0006355
Seca3g03670 311 MobiDBLite consensus disorder prediction 117 153 - -
Seca3g03670 311 MobiDBLite consensus disorder prediction 13 56 - -
Seca3g03670 311 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 51 215 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03670 Seca-Chr3 66115586 66117050 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03670 39 310 C2C2-Dof Transcription Factor Family AT3G55370 45.118 2.18e-59 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Seca3g03670 zf-Dof 1.4e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03670 - - gmx:100816635 379.793