Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03669 ATGGAGGGTGAGAAAGTAGGTGTTGTGATTGACTTGGTGAATGAGATAGCTGCTATTTCAGACTTCAGGCCTATGGTGAAGAAGCAGTACTGCAACTTGGCGCGGAGGTTGAAGCTGTTGATCCCGTTGTTCGAGGAGATTAGGGACATGAAAGATGCAATCCCTGAGGACACTTCGAAAGGTATGCTTGCCTTCAAGGAAGCTCTTGAATCCGCTAGAGAACTCCTCAGATTTGGAAGTGAAGGCAGCAAGATTTACATGCTTCTGGAGAGGGACCAAATTATGAATAAATTCTATGAGGTGACAGCTCAGTTGGAACAAGCGTTGGATGGAATTTCCTATGATAAACTTGACATATCAGATGAAGTTAAGGAGCAGGTTGAACTGGTTCTTACCCAGTTCAGAAGAGCCAAAGGGAGGGTTGATGAACCAGATGCCAAGTTGTATGAGGATATGCTGTCCCTTTACAACAATAGCAGTGATGCAACTACAGATCCGGCTGTTCTAAGTCGATTAGCTGAAAAATTGCAATTGATGGGAATAGCTGATCTTACGCAAGAATCACTTGCTTTGCATGAGATGGTGGCAGCAAGTGGTGGAGATCCAGGGGGACGCATCGAGAAGATGTCAATGTTATTGAAGAAGATAAAGGATTATGTACAAACAGAAAACCTAGTCAAGGAAGATAATGTAGGAGGAAAAGGCCTTTCTTCAAGAGTTTCTAGACCAGGGTCAAATGAAAAGAATCACCAGGCCCCTGTTATCCCTAATGATTTTCGATGTCCAATTTCCCTGGAATTGATGAGGGACCCTGTCATAGTTTCAACGGGACAGACTTATGAGCGTTCTTGTATTGAGAAGTGGTTGCAAGCCGGGCATGGGACATGCCCAAAAACACAGCAGAGTCTCACTAGTACTGTTCTCACACCCAACTATGTCTTACGAAGCCTCATTGAGCAATGGTGTGAAGCCAATGGCATAGAGCCACCAAAACGACCCAGCAGTTCTCAGCCTCATTGTTTGTTATGCGGTAAATGCTAA 1041 0.4448 MEGEKVGVVIDLVNEIAAISDFRPMVKKQYCNLARRLKLLIPLFEEIRDMKDAIPEDTSKGMLAFKEALESARELLRFGSEGSKIYMLLERDQIMNKFYEVTAQLEQALDGISYDKLDISDEVKEQVELVLTQFRRAKGRVDEPDAKLYEDMLSLYNNSSDATTDPAVLSRLAEKLQLMGIADLTQESLALHEMVAASGGDPGGRIEKMSMLLKKIKDYVQTENLVKEDNVGGKGLSSRVSRPGSNEKNHQAPVIPNDFRCPISLELMRDPVIVSTGQTYERSCIEKWLQAGHGTCPKTQQSLTSTVLTPNYVLRSLIEQWCEANGIEPPKRPSSSQPHCLLCGKC. 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03669 346 FunFam RING-type E3 ubiquitin transferase 2 115 - -
Seca3g03669 346 Pfam U-box domain 255 325 IPR003613 GO:0004842|GO:0016567
Seca3g03669 346 CDD MLKL_NTD 7 135 - -
Seca3g03669 346 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 253 328 IPR013083 -
Seca3g03669 346 CDD RING-Ubox_PUB 256 308 IPR045210 -
Seca3g03669 346 MobiDBLite consensus disorder prediction 230 253 - -
Seca3g03669 346 PANTHER U BOX DOMAIN-CONTAINING 25 334 - -
Seca3g03669 346 SMART Ubox_2 258 321 IPR003613 GO:0004842|GO:0016567
Seca3g03669 346 Gene3D - 3 115 IPR036537 GO:0007166
Seca3g03669 346 ProSiteProfiles U-box domain profile. 254 328 IPR003613 GO:0004842|GO:0016567
Seca3g03669 346 FunFam RING-type E3 ubiquitin transferase 255 328 - -
Seca3g03669 346 SUPERFAMILY RING/U-box 248 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03669 Seca-Chr3 66107884 66112935 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03669 1 339 U-box Gene Family AT3G46510 62.573 8.65e-146 425
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03669 - - gmx:100812160 578.556